Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi968g00002 ATGCCGAGTCTGAAACGGTGCAAACTCGGTGACCCGGTGGGTGAGAATGACGAGTGCTCTTATGCTCGTAAGAAGAGGAAGACAAACGGGTACTACCCTCTGAACCTTCTCGGCGATGTCGCCAACGGTATAATCCCGGTGAGTTTTCACGGTCTTCTGAGTGCTGGTGTGACAGAGAAAGGATTCTCTGCATCGTGGTGCACCCAAGTTTCGTGCTCCCCTGGCGAAGTGGAATCGAACTCAAAGGGTGAGGCTGTTCCAGCGAAGAAGAACCAGGTTCAGCGGCCGCCACTGGTTCGGACTTCGAGGGGGCGAGTGCAGGTTCTCCCTTCTCGCTTCAATGACTCAGTTATTGATAATTGGAGGAAGGAGAGTAAGACCAACTTGCGTGATTGTGATAATATCGAAGATGAATTTGAATGCAAGAGGGATAAGTTAAGCTTCAAGACACCCAAAACTTGCAACCAGAATGCGAGGAAAGGGCGAAACGATGAGAAAATCGGTTCTAAGCCTCGCAAGTACTCGGCATTGTGTGGGGATGATGTTGGTGTGAGGTATAAGAGTTTTGGTACGAGCAAGCATTCAACTTTGCGTGGTGCATTGGCCTCGAGGCGTGAGATGTTTGTTGAGGATGAGAGAGGAAGGTTTTTGGAAGAGGATGGGGTTGATTTGATGGGGAATGATAGATTATTGAAGGAGAATGGGGAGAAAAAAGATGGGCTGTATGGACCAGAAGATTTTTATGCAGGTGATATTGTGTGGGCCAAAGCAGGGAGGAAGGAACCTTTTTGGCCTGCCATTGTCATTGATCCTACGAGACAGGCACCTGAGCTGGTTCTGAGGTCTTTTATAGCTGATGCAGCCTGTGTCATGTTTCTTGGGTACGCAGGGAGTGAAAATCAAAGGGACTATGCATGGGTGAAGCATGGCACGATTTTTCCATTTATGGATTATGTAGACAGGTTTCAAGGGCAGTCTGAATTGAGTTTCTATAATCCCTCTGACTTCCAAATGGCAATAGAGGAGGCATTTTTGGCAGACCAGGGCTTCACAGAGAGGTTGACAGCTGATATAAATGCAGCAGCTGGTAATGCTGGTTTTGATGATACTGTTCTGAAATCCTTTCAGGAGGTAACTGGTCCAAACCAGTATGCTGGACATCGCTTTTTGAACCAGGATTTATTTGACAAGAAAGACACACGACCCTGTGAAGCCTGTGGATTGGGCCTTCCTTACAAGATGTCAAAGAAAACAAAGGATTCAACACCTAGTGGTCAATTCCTATGTAAAACATGTGCTAGGTTAACAAAATCAAAACATTATTGTGGCATATGCAAGAAAGTTTGGAATCATTCAGATAGTGGAAGCTGGGTGCGCTGTGATGGATGTAAAGTGTGGGTGCATGCGGAATGCGACAAAATTTCTAGCAACCTTTTCAAGAATCTTGAAGGCACTGATTATTACTGCCCTACCTGCAAAGCCAAGTTTGATTTTGAGTTATCTGATTCAGAAAAATCACAGCCAAAAGTCAAGTGGAACAAAAACAATGGGCAGCTAGTGCTTCCAAATAAAGTCACTGTTCTCTGCAATGGTGTGGAAGGAATATATTTTCCAAGCCTTCACTCATGTCAGATAGCTGTTCATCAAGAATGCTATGGAGCAAGAAATGTTCGAGACTTTACATCTTGGGTTTGTAAAGCTTGTGAAACACCTGACATCAAGCGGGAGTGTTGTCTTTGTCCTGTAAAAGGTGGTGCTCTAAAGCCAACCGATGTTGACACATTATGGGTTCATGTCACCTGTGCTTGGTTTCGACCTGAAGTCTCTTTTGCTAGTGATGAGAAGATGGAGCCTGCTTTGGGTATTCTAAGTATTCCATCAAATTCTTTTGTGAAGATTTGTGTTATTTGCAAGCAAATTCACGGTTCGTGTACACAATGTTGCAAGTGTTCCACTTATTTCCATGCCATGTGTGCATCAAGGGCCGGTTATCGAATGGAGGTATGCAATCCTTATTCAACTGAGAAAGAGATTACTCTTCCTCCTTTGCCCCTTCCTATCATTGCCTTTACAGTGGCTCCAAATCCAGACACTGTTTTGATCATGCAAACCCCTCTTGGGGTCATTTCAACCAAAAGCCTTCTCCAAACTAAGAAAAAAGCTGGATCAAGGTTAATCTCATCCAACAGAATAAAGCAAGAAGACACTCCTGTTGATAATGTTGAGCATGACCCATTCTCTGCTGCTAGGTGTCGTATCTTTCAAAGAACAAATCACACTAAAAAGAGAGCAGCAGATGAAGCCACTTTTCTTCAAGTGAGGGGTGGTAGAGGAACCTCAGGCATTTTCTTCTTTCAGAGAACGCCTTTACCACTTGCAGGCATACATGGATGGGGCCTGTTTGCACGAAGAAATATTCAAGAAGGCGAAATGGTTCTTGAATATCGAGGTGAACAAGTGAGGCGCAGCATCGCAGATCTGAGAGAGGCACGCTATAGATCAGAAGGGAAAGACTGCTATGTATGA 2526 0.447 MPSLKRCKLGDPVGENDECSYARKKRKTNGYYPLNLLGDVANGIIPVSFHGLLSAGVTEKGFSASWCTQVSCSPGEVESNSKGEAVPAKKNQVQRPPLVRTSRGRVQVLPSRFNDSVIDNWRKESKTNLRDCDNIEDEFECKRDKLSFKTPKTCNQNARKGRNDEKIGSKPRKYSALCGDDVGVRYKSFGTSKHSTLRGALASRREMFVEDERGRFLEEDGVDLMGNDRLLKENGEKKDGLYGPEDFYAGDIVWAKAGRKEPFWPAIVIDPTRQAPELVLRSFIADAACVMFLGYAGSENQRDYAWVKHGTIFPFMDYVDRFQGQSELSFYNPSDFQMAIEEAFLADQGFTERLTADINAAAGNAGFDDTVLKSFQEVTGPNQYAGHRFLNQDLFDKKDTRPCEACGLGLPYKMSKKTKDSTPSGQFLCKTCARLTKSKHYCGICKKVWNHSDSGSWVRCDGCKVWVHAECDKISSNLFKNLEGTDYYCPTCKAKFDFELSDSEKSQPKVKWNKNNGQLVLPNKVTVLCNGVEGIYFPSLHSCQIAVHQECYGARNVRDFTSWVCKACETPDIKRECCLCPVKGGALKPTDVDTLWVHVTCAWFRPEVSFASDEKMEPALGILSIPSNSFVKICVICKQIHGSCTQCCKCSTYFHAMCASRAGYRMEVCNPYSTEKEITLPPLPLPIIAFTVAPNPDTVLIMQTPLGVISTKSLLQTKKKAGSRLISSNRIKQEDTPVDNVEHDPFSAARCRIFQRTNHTKKRAADEATFLQVRGGRGTSGIFFFQRTPLPLAGIHGWGLFARRNIQEGEMVLEYRGEQVRRSIADLREARYRSEGKDCYV 841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi968g00002 841 Pfam PWWP domain 250 343 IPR000313 -
Sebi968g00002 841 ProSiteProfiles Extended PHD (ePHD) domain profile. 574 685 IPR034732 -
Sebi968g00002 841 SUPERFAMILY FYVE/PHD zinc finger 440 496 IPR011011 -
Sebi968g00002 841 Gene3D - 244 349 - -
Sebi968g00002 841 ProSiteProfiles Zinc finger PHD-type profile. 439 495 IPR019787 -
Sebi968g00002 841 ProSiteProfiles PWWP domain profile. 249 318 IPR000313 -
Sebi968g00002 841 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 572 677 IPR013083 -
Sebi968g00002 841 CDD PHD_TCF19_like 442 492 - -
Sebi968g00002 841 SMART PHD_3 633 673 IPR001965 -
Sebi968g00002 841 SMART PHD_3 441 493 IPR001965 -
Sebi968g00002 841 SMART PHD_3 528 569 IPR001965 -
Sebi968g00002 841 FunFam Histone-lysine N-methyltransferase 572 679 - -
Sebi968g00002 841 Pfam PHD-zinc-finger like domain 576 670 - -
Sebi968g00002 841 Pfam PHD-finger 441 494 IPR019787 -
Sebi968g00002 841 CDD PWWP_AtATX3-like 248 352 - -
Sebi968g00002 841 MobiDBLite consensus disorder prediction 75 96 - -
Sebi968g00002 841 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 514 571 IPR013083 -
Sebi968g00002 841 SUPERFAMILY SET domain 794 839 IPR046341 -
Sebi968g00002 841 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 435 497 IPR013083 -
Sebi968g00002 841 SUPERFAMILY Tudor/PWWP/MBT 242 346 - -
Sebi968g00002 841 PANTHER PHD FINGER PROTEINS 54 515 - -
Sebi968g00002 841 Pfam PHD-finger 542 569 - -
Sebi968g00002 841 Gene3D SET domain 710 841 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi968g00002 Sebi-Chr968 27902 36867 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi968g00002 398 466 EF-hand Containing Proteins AT5G28340 52.174 1.59e-16 81.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Sebi968g00002 zf-HC5HC2H_2 3.6e-26 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi968g00002 - - aprc:113853254 963.755