LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sebi964g00007	ATGTTTCCACAATCAGTCCATTCTCAACAAGTATACCTCAATAGCACTGTCTATGACTGCTCTAACAACCCTTCTTCACCAAAAGGATACCTTTGCAATGGCCTTCAAAAATCATGCACTTCCTTTTTAGTTTTCAGGTCAAAACCTCCCTATGATAACCCTGTAAGCATTGCCTACCTTCTTGGCTCTGAAGCATCTTCCATAGCCTCAATCAACAAGATCTCAACAAATGACAAGATTCCTCCCAATAAATCAATCATTGTCCCAGTCTTTTGTTCATGTTCTGGAAATATCTACCAGCATAGCACACCTTACACTGTTAGCAAGAATGACACTTACTATGAGTTGGTAAAAGAGACTTACCAAGGCCTCACAACATGTCAAGCTTTGATGGGTCAGAATTACTATGCTTCTGCCAACATTGCAGTTGGTGCTGAACTCACAGTTCCTATGTTATGTGCTTGTCCCTCTGAAAACCTGACAGCAAAAGGAGTGAGCTCCTTGCTGGTTTACTTGGTGAACTATGGTGACACGGTTAAGTCTATAGGAGAGGCTTATGGTGTTGATGAACAAAGTATGAGAGAGGCTAATGAGTTGCCAGTGCCACCAAATGCAAACAGTAGCATCATGCTCTCTGCCTTGACGCCTATCTTAGTTCCTCTGAGTGGCAAGAGTTGCAAAGAGAATCCAGATAAATTCTATTGCAAATGTTCCTTAGCACTGCATGCAGATGGAAGCTCCAAGGGACTCTTCTGTGATGAATCTCATGGTCAAAAATTCCCTGCCAAGTTGGTTGCTGCATTAGGTGTTGGAATTGGTGCTGCCTTTCTGTGTTTGTTTCTTTTGGGTTACAAGTCATATCAATACATGCAGAAAAAGAGAGAAAGTATTCATAAGGAAAAGCTGTTTAGGCAAAACGGTGGCTACTTGTTACAAGAGAAGTTGTCATCTTATGGACATGGAGAAAAGGCAAAGCTTTTTACTGCAGAGGAGCTGCAAAGAGCAACAGATAACTACAACAGGAGTAGGTTTCTTGGTCAGGGTGGCTATGGCATGGTGTATAAAGGAATGTTACCAGATGGAACTATAGTAGCAGTGAAGAAATCAAAACAAATTGAAAGGAACCAGATTGAGACTTTTGTCAATGAAGTGGTTATTTTATCACAGATCAACCACAGGAACATTGTCAAACTCTTAGGTTGTTGTCTTGAAACAGAAACACCATTACTAGTCTATGAATTTATTCCCAATGGAACTCTATCCCAGCATATCCATAAGAAAGACCATGAGTCAACTCTTCCATGGGACAGTCGCCTTAGAATTGCATGTGAAGTTGCTGGAGCAGTGGCATATATGCATTTTTCAGCTAGTGTTCCCATCTTCCATAGAGACATCAAACCCACCAACATACTCCTGGACAGTAACTACAGTGCCAAAGTGTCAGATTTTGGGACATCAAGATCAGTCCCACAAGATAAGACTCACTTAACCACAGCTGTAGGAGGTACTTTTGGATACATAGACCCTGAATATTTCCAGTCCAGTCAATTAACAGATAAGAGTGATGTATATAGTTTTGGGGTTGTGCTTGTAGAGCTCATAACTGGGACAAAGCCCATTTCATTCTATGATGAAGATGAGGGTCAGAATCTGATTGCACATTTCATTTCTGTGATGAAGGAGAACCAACTTTCTCAGATTTTAGATGCTAAGGTGCTGAAGGAAGCAAGGAAAGATGACATTCTTGCCATTGCAAATCTTGCAATGAGATGTTTGAGACTTAATGGAAAGAAAAGACCAACAATGAAAGAGGTTTCAGCAGAATTAGAAGCATTGAGAAAGGTACAAAGTTCCTTACAAATCAACCATGATCATGAGTCACCAAATGATGGAAAATCATTTAAGCACACAAATAGTGACATAGTCCAAGAATCCAGAGAGGAAAGCATTCCATTATCCTTACAAATGGAACTCACATCCTTCTAA	1986	0.4043	MFPQSVHSQQVYLNSTVYDCSNNPSSPKGYLCNGLQKSCTSFLVFRSKPPYDNPVSIAYLLGSEASSIASINKISTNDKIPPNKSIIVPVFCSCSGNIYQHSTPYTVSKNDTYYELVKETYQGLTTCQALMGQNYYASANIAVGAELTVPMLCACPSENLTAKGVSSLLVYLVNYGDTVKSIGEAYGVDEQSMREANELPVPPNANSSIMLSALTPILVPLSGKSCKENPDKFYCKCSLALHADGSSKGLFCDESHGQKFPAKLVAALGVGIGAAFLCLFLLGYKSYQYMQKKRESIHKEKLFRQNGGYLLQEKLSSYGHGEKAKLFTAEELQRATDNYNRSRFLGQGGYGMVYKGMLPDGTIVAVKKSKQIERNQIETFVNEVVILSQINHRNIVKLLGCCLETETPLLVYEFIPNGTLSQHIHKKDHESTLPWDSRLRIACEVAGAVAYMHFSASVPIFHRDIKPTNILLDSNYSAKVSDFGTSRSVPQDKTHLTTAVGGTFGYIDPEYFQSSQLTDKSDVYSFGVVLVELITGTKPISFYDEDEGQNLIAHFISVMKENQLSQILDAKVLKEARKDDILAIANLAMRCLRLNGKKRPTMKEVSAELEALRKVQSSLQINHDHESPNDGKSFKHTNSDIVQESREESIPLSLQMELTSF	661

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sebi964g00007	661	Pfam	LysM domain	105	150	IPR018392	-
	Sebi964g00007	661	Pfam	LysM domain	171	200	IPR018392	-
	Sebi964g00007	661	Gene3D	Transferase(Phosphotransferase) domain 1	415	636	-	-
	Sebi964g00007	661	ProSiteProfiles	Protein kinase domain profile.	339	612	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sebi964g00007	661	FunFam	Wall-associated receptor kinase 2	310	414	-	-
	Sebi964g00007	661	SMART	LysM_2	104	150	IPR018392	-
	Sebi964g00007	661	SMART	LysM_2	170	220	IPR018392	-
	Sebi964g00007	661	SMART	LysM_2	50	89	IPR018392	-
	Sebi964g00007	661	ProSitePatterns	Protein kinases ATP-binding region signature.	345	368	IPR017441	GO:0005524
	Sebi964g00007	661	SUPERFAMILY	Protein kinase-like (PK-like)	322	609	IPR011009	-
	Sebi964g00007	661	SMART	serkin_6	339	612	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sebi964g00007	661	CDD	STKc_IRAK	345	612	-	-
	Sebi964g00007	661	FunFam	Wall-associated receptor kinase 2	415	631	-	-
	Sebi964g00007	661	Pfam	Protein kinase domain	339	606	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sebi964g00007	661	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	460	472	IPR008271	GO:0004672\|GO:0006468
	Sebi964g00007	661	Gene3D	Phosphorylase Kinase; domain 1	312	414	-	-
	Sebi964g00007	661	PANTHER	WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21	105	620	IPR045274	GO:0007166
	Sebi964g00007	661	Coils	Coil	602	622	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sebi964g00007	Sebi-Chr964	188393	190719	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sebi964g00007	259	613	Receptor kinase-like Gene Family	AT1G16130	57.263	5.93e-141	427

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_WAK	Sebi964g00007		Pkinase	3.5e-50	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sebi964g00007	-		-	gmx:100795455	1092.03