Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi964g00006 ATGGAGTTTCACTACCTTTACATTCTCTCCACGATCCTGCTCTTATATCTGTTTCTTCCATCAATCAACTGCCAACAAGTATACCTTAATACCACTGTCACAGACTGCTCTGACAACCCTTCTGCACCAAAAGGATACCTCTGCAATGGTGCTAAAAAATCATGCACTTCCTTCTTAGTTTTTAGGTCCAAACCTCCCTATGACAACCCTATAAGAATTGCCTACCTTCTTGGCTCTGAAGCATTTAACATAGCCTCAATCAACAAGATCTCAACAAATGACATGATTCCCTCCAATAAATCAATCATTGTCCCTGTCTTTTGTTCATGTTCTGGAAATATTTATCAGCATAACACCCCTTACACTGTCAACAAGGATGACACCTACTTTATGTTGGTAAATGGAACTTACCAAAGCCTCACCACCTGCCAGGCATTGATGGGTCAGAATTACTATTCTGCTGATAACATTGCAATTGGTGCTGAGCTCACTGTTCCATTACTATGTGCTTGTCCCACCACAAACCAGACGGCAAGAGGGGTCACCTCCTTGCTGGTTTACTCAGTGACGGATGGTGACACCATTAAGTCCATAGGAGAGGCTTATGGTGTTGATGAACTAAGTATGCTAGAGGCCAATGGATTGCCAGTGCCTCCAAGTGCAAACAGCAGCATGACCATCTTTGCCATGACACCTATCTTAGTTCCTCTCAGAGGCAAGAGTTGCAAAGAGGACCCGGATAGTTTCTATTGTACCTGTTCCCAGGGAATGCTTGCAGATGGAAGCTCCAAGGGACTCAACTGTGATGAATCTGCTGGTCAAAAATTTCCTGTCAAATTGGTTGCTTCATTAGGTGTTGGCATTGGTGCAGGCTTTCTGTGTTTGTTTCTTTTGGGTTACAGGTTATATCAATATGTACAGAAAAGGAGGGAAAGTAATCGAAAGGAAACACTGTTCAGGCAAAACGGTGGCTACTTGTTACAAGAGAAGTTGTCATCTTATGGACATGGAGAAAAGGCAAAGCTTTTTACTGCAGAGGAGCTGCAAAGAGCAACAGATAACTACAACCAGAGTAGGTTTCTTGGCCAGGGTGGCTATGGCATGGTGTACAAAGGAATGTTACCAGATGGAACTATAGTTGCAGTTAAGAAGTCAAAAGAAATTGAAAGGAACCAGATGGAAACTTTTGTTAATGAAGTGGTCATTTTATCACAGATCAACCACAGGAACATTGTGAAACTCATAGGTTGTTGTCTTGAGACAGAAACTCCTTTGCTAGTCTATGAATTTATTCCCAATGGAACTCTCTCCCAACATATCCATAGAAAAGACCATGAGTCATCCCTTCCATGGGAGAATCAGATTTCTAACATTTTAGATGCCAGAGTGGTCAAGGAAGCAAGGAAAGATGACATTCTTGCCATTGCAAATCTTGCAATGAGATGCTTGAGACTTAATGGGAAGAAGAGACCAACAATGAAAGAGGTGTCAGCAGAGCTAGAAGCATTAAGAAAGATACAAGATTCCTCACAGATCAACTCTGTTCATGAGTCAGCAATTGATGTAGAATCACTGAAGTACCCCACTAGTGAAGCAGCACAAGATTCCACAGAGGAAAGCTTTATGCTATCCCTACAAGTAGAGTCCACATCCTTTTAA 1659 0.4201 MEFHYLYILSTILLLYLFLPSINCQQVYLNTTVTDCSDNPSAPKGYLCNGAKKSCTSFLVFRSKPPYDNPIRIAYLLGSEAFNIASINKISTNDMIPSNKSIIVPVFCSCSGNIYQHNTPYTVNKDDTYFMLVNGTYQSLTTCQALMGQNYYSADNIAIGAELTVPLLCACPTTNQTARGVTSLLVYSVTDGDTIKSIGEAYGVDELSMLEANGLPVPPSANSSMTIFAMTPILVPLRGKSCKEDPDSFYCTCSQGMLADGSSKGLNCDESAGQKFPVKLVASLGVGIGAGFLCLFLLGYRLYQYVQKRRESNRKETLFRQNGGYLLQEKLSSYGHGEKAKLFTAEELQRATDNYNQSRFLGQGGYGMVYKGMLPDGTIVAVKKSKEIERNQMETFVNEVVILSQINHRNIVKLIGCCLETETPLLVYEFIPNGTLSQHIHRKDHESSLPWENQISNILDARVVKEARKDDILAIANLAMRCLRLNGKKRPTMKEVSAELEALRKIQDSSQINSVHESAIDVESLKYPTSEAAQDSTEESFMLSLQVESTSF 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi964g00006 552 ProSitePatterns Protein kinases ATP-binding region signature. 361 384 IPR017441 GO:0005524
Sebi964g00006 552 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 9 460 - -
Sebi964g00006 552 Gene3D Phosphorylase Kinase; domain 1 328 427 - -
Sebi964g00006 552 Pfam Protein tyrosine and serine/threonine kinase 358 449 IPR001245 GO:0004672|GO:0006468
Sebi964g00006 552 SUPERFAMILY Protein kinase-like (PK-like) 338 455 IPR011009 -
Sebi964g00006 552 Pfam LysM domain 187 217 IPR018392 -
Sebi964g00006 552 FunFam Wall-associated receptor kinase 2 326 430 - -
Sebi964g00006 552 Gene3D Transferase(Phosphotransferase) domain 1 428 526 - -
Sebi964g00006 552 ProSiteProfiles Protein kinase domain profile. 355 552 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi964g00006 Sebi-Chr964 184810 187068 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi964g00006 452 513 Receptor kinase-like Gene Family AT1G16130 46.774 5.91e-11 63.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Sebi964g00006 PK_Tyr_Ser-Thr 1.2e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi964g00006 - - gmx:100795455 707.983