Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi963g00001 ATGGATAGGATTCAAGAGGCAAATGAAAATAAATCTCAGCGTTCCTCCTCTTCAATGGTAGCTATAGCAATCAAGGGTAACAAGAAAAGCAAATATGTGGTACAGTGGGCACTTAATAAGTTTGTTCCAGAGGGAATGATTATCTTCAAGCTGATACATGTCCAAGCTGGTATAAAAGGAGTTCCAACACCAATGGGAAATGTGATCCCCCTCTCACAAGTGCGTAATGATGTAGCAACTGCTTACAAAAAGGAAGTGGAGTGTCAAACAAATCAAATGCTTCTACCTTTAAAGAAAATGTGTGAGCAGAGAAAGGTACATGTAGATGCTGTAGTGATTGAATCAGATGACGTGGCAACTTCAGTAGCAGAGGAAGTAGCTAAGGGTGCTATAACCAAACTTGTGGTTGGAGCTTCATCTAGTGGCATATTTAAAAGTGAGACAATTTCCAAAACATGGGTGCTAAAAGAGCCAGACAGAGGAAGTTTCTTATCTATATTCAAGGTTGTGCAAAAGGACAACCTTGCTGATTTAAACATAAGGGTATGTCTGCAAAAATCTCAGTATGCACTCCAAGATTTTGTACAGTCTATGCTATTTCAAAAGGAAAATTGTCCATACGGGCCATCAGACCTGCAGATTGATCATGGAAGCATTATAGATGACATTAGTGAAACCAGTTTTTCCTCCAACAGCTCATCAAACTACACTTCCACCACTCAGACAGAGTCTGGCTCAGTTACATCTTATGCTGCTTTACATTCCTCTTCCCTAGCAACGCAGCGATTTCAAGCTCTCCTCAATTGCAGAAGCGTTATGTCAGATACTGAATCTTGGATTTATGATCAAATTTCTGTCAAGGATGTGCCACTAGCAACTAAACTTCTGTCACCAAATAGGCAGCTGAATGAACTGAGCAAGAGGAGATCAGAAGAATCCATGAAAATGAAGGAGATTATTGCTAAGGAGGAGATGGCCAAAGAATTAGCAAGACAAGAAAGAGAGAAATATGAAACTGCAGCAAGGGAAGCCTCATATTTGAAAGAATGTGCTGAAAGAGAAGAAGCAAGCAGAAAGAAAGGAAACAGAATTGAAAGCTATTCGTGCTGCCAAGAGAAAGAAAAGCTGGAGGATGCTCTAAGTGGTTCAATGCCCCAGTACCGGAAGTTTACATGGGATGAAATAGTTTCAGCTACTTCATCGTTCTCTGAAGATCTGAGAATTGGAATGGGAGCATATGGAATTGTGTATAAGTGCATTTTGCATCATACAACTGTTGCTGTGAAAGTTCTTCACTCTAATGGAAACCGCAAAAGCAAGCAATTCCAGCAGGAGTTAGAGATATTGAGCAGAATTCGTCATCCAAACTTGCTACTTCTTCTTGGTGCATGTCCTGACAAGGATGTCTTGTATATGAATATATGGAGGAAATGCTCTTTCCTTTCTTCACAGCTCAAGCCAGAACCTATCATCCATCGTGACTTGAAACCAGCAAACATCTTGCTTGGCCAGGACACAGAACCTGTTGGGACACTCTGCTACATAGATCCTGAGTATCAAAGGACTGGGTTAATATCTCCTAAATCTGATGTTTATGCTTTTGGAATGGTGATCTTACAATATATTGGATCCAGAGGCAGGGCATGGCCATTTCAAGAAACATTAGACTTAGCTCGGTTAGGACTGAGCTGTGCAGAGCTTCGGCGTAGAGACCGGCCTGATTTAAAAGATCACGTTCTTCCAACACTAGAGAGATTGAAAGAAGTTGCTGATAGGGCTCAACATTCTGCTTCCATTGTTCCTATTAAATCCAGACCTCCTAATCACTTTATCTGTCCAATACTTCAGGATGTGATGGATGATCCTTGTGTTGCTGCGGATGGATATACATATGATCGCAAAGCAATTGAAAAGTGGCTTCAAGAGAATGACAAATCACCAATGACAAATATGGCTTTGCCTCATAAGCATCTAATTCCTAATTACACACTTCTGTCAGCAATTATGGAGTGGAAGTCCAGTGAAATATGA 2031 0.4072 MDRIQEANENKSQRSSSSMVAIAIKGNKKSKYVVQWALNKFVPEGMIIFKLIHVQAGIKGVPTPMGNVIPLSQVRNDVATAYKKEVECQTNQMLLPLKKMCEQRKVHVDAVVIESDDVATSVAEEVAKGAITKLVVGASSSGIFKSETISKTWVLKEPDRGSFLSIFKVVQKDNLADLNIRVCLQKSQYALQDFVQSMLFQKENCPYGPSDLQIDHGSIIDDISETSFSSNSSSNYTSTTQTESGSVTSYAALHSSSLATQRFQALLNCRSVMSDTESWIYDQISVKDVPLATKLLSPNRQLNELSKRRSEESMKMKEIIAKEEMAKELARQEREKYETAAREASYLKECAEREEASRKKGNRIESYSCCQEKEKLEDALSGSMPQYRKFTWDEIVSATSSFSEDLRIGMGAYGIVYKCILHHTTVAVKVLHSNGNRKSKQFQQELEILSRIRHPNLLLLLGACPDKDVLYMNIWRKCSFLSSQLKPEPIIHRDLKPANILLGQDTEPVGTLCYIDPEYQRTGLISPKSDVYAFGMVILQYIGSRGRAWPFQETLDLARLGLSCAELRRRDRPDLKDHVLPTLERLKEVADRAQHSASIVPIKSRPPNHFICPILQDVMDDPCVAADGYTYDRKAIEKWLQENDKSPMTNMALPHKHLIPNYTLLSAIMEWKSSEI 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi963g00001 676 ProSiteProfiles U-box domain profile. 605 676 IPR003613 GO:0004842|GO:0016567
Sebi963g00001 676 CDD STK_N 20 144 - -
Sebi963g00001 676 ProSitePatterns Protein kinases ATP-binding region signature. 408 429 IPR017441 GO:0005524
Sebi963g00001 676 SMART Ubox_2 609 671 IPR003613 GO:0004842|GO:0016567
Sebi963g00001 676 CDD RING-Ubox_WDSUB1-like 607 661 - -
Sebi963g00001 676 Gene3D HUPs 11 149 IPR014729 -
Sebi963g00001 676 Coils Coil 320 340 - -
Sebi963g00001 676 PANTHER OS02G0152300 PROTEIN 19 670 - -
Sebi963g00001 676 SMART serkin_6 402 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi963g00001 676 Pfam Protein kinase domain 405 472 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi963g00001 676 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 605 676 IPR013083 -
Sebi963g00001 676 ProSiteProfiles Protein kinase domain profile. 402 676 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi963g00001 676 Pfam U-box domain 607 673 IPR003613 GO:0004842|GO:0016567
Sebi963g00001 676 Gene3D Phosphorylase Kinase; domain 1 380 472 - -
Sebi963g00001 676 Gene3D Transferase(Phosphotransferase) domain 1 473 603 - -
Sebi963g00001 676 ProSitePatterns Serine/Threonine protein kinases active-site signature. 490 502 IPR008271 GO:0004672|GO:0006468
Sebi963g00001 676 SUPERFAMILY Protein kinase-like (PK-like) 383 577 IPR011009 -
Sebi963g00001 676 SUPERFAMILY RING/U-box 604 673 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi963g00001 Sebi-Chr963 14141 21146 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi963g00001 20 673 U-box Gene Family AT5G51270 38.217 1.05e-154 465
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Sebi963g00001 U-box 6.2e-19 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi963g00001 - - gsj:114409387 829.32