Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi962g00010 ATGAATCTTCTTGTTCTGTTTTTTCCCATTTGGGTGCTGAGCATTTCTCTTTCATCAGCAATTCTTCATGCTGCAGCATCCCCCATTTATGTCTCTCAATCTTCTGCAAATGCACAAGCAGCATCTCCAGGAATTCAGGAGGTTAGAATAGTGCACCACCAGAATTTGAACAAGAGAATTCTAATAGCACTAATTGCTTGTTCTACTCTTCTTGGTGGAACCTTCCTATTCTTATTATATGTCTGGTTCCGTCGACATAAAAACTTAAGAAGCTCCAATATTAAAAGCCATGGAACCATGGAGGCTGCGAAAGGGGAAGCCTTAAGCTCTAATGATGCTAAAATTAACTACTCAAGGGTGGCAGATAAGAAGAGTTCAGTTGCTATTTTTGACTTTCAGTTGTTAGAGGCTGCAACAAACAACTTTAGCTCAAGTAATGTTATGGGAGAGAGTGGTTCTAGAATTGTTTACAGGGCTTGTCTTGATGAACATTTCCGAGCAGCTGTGAAAAAAGCAGATAGTAATGCTGATAGAGAATTTGAGAATGAAGTGAGTTGGTTGAGCAAGATACGGCATCAGAATATCATTAAACTTCTGGGTTATTGTATTCATGGTGAATCAAGGTTTCTTGTTTATGAATTGATGGACAATGGATCTCTGGAAACTCAATTGCATGGGCCTAATCGTGGATCATCTTTAACTTGGCATCTCCGATTAAGAATTGCAGTTGATGTTGCCAGAGCATTAGAATATCTCCACGAGCACTCCAATCCTCCTGTAGTTCATAGAGACCTAAAATCTTCTAATGTTCTTTTGGATTCTAACTTGAATGCCAAGCTATCAGATTTTGGACTTGCTATAGCTTCTGGAATGCAACACAAGAACATGAAGATGTCAGGAACTTTGGGATACGTGGCACCTGAGTACATATCACATGGTAAACTAACTGATAAGAGCGATGTCTATGCTTTCGGGGTTCTTCTTCTAGAACTTCTAACTGGAAGAAAGCCCATGGAGAACATGTCCTCAGACCAATATCAATCCCTAGTCTCATGGGCCATGCCTCAACTAACTGACAGATCAAAGCTTCCAAGTATTCTGGATCCTGTCATCAGAGACACAATGGATTTGAAGCATTTATATCAGGTTGCTGCAGTGGCTGTACTGTGTGTGCAAGCAGAACCAAGTTATAGGCCACTAATAACAGATGTTCTGCATTCTCTCATCCCTTTGGTACCCGTTGAGCTTGGAGGGTCACTTAGAGTTACAGAACCAATCCGCTCAGAGAACTCCAATTGA 1299 0.408 MNLLVLFFPIWVLSISLSSAILHAAASPIYVSQSSANAQAASPGIQEVRIVHHQNLNKRILIALIACSTLLGGTFLFLLYVWFRRHKNLRSSNIKSHGTMEAAKGEALSSNDAKINYSRVADKKSSVAIFDFQLLEAATNNFSSSNVMGESGSRIVYRACLDEHFRAAVKKADSNADREFENEVSWLSKIRHQNIIKLLGYCIHGESRFLVYELMDNGSLETQLHGPNRGSSLTWHLRLRIAVDVARALEYLHEHSNPPVVHRDLKSSNVLLDSNLNAKLSDFGLAIASGMQHKNMKMSGTLGYVAPEYISHGKLTDKSDVYAFGVLLLELLTGRKPMENMSSDQYQSLVSWAMPQLTDRSKLPSILDPVIRDTMDLKHLYQVAAVAVLCVQAEPSYRPLITDVLHSLIPLVPVELGGSLRVTEPIRSENSN 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi962g00010 432 SUPERFAMILY Protein kinase-like (PK-like) 122 408 IPR011009 -
Sebi962g00010 432 ProSitePatterns Serine/Threonine protein kinases active-site signature. 260 272 IPR008271 GO:0004672|GO:0006468
Sebi962g00010 432 PANTHER OS01G0750732 PROTEIN 25 411 - -
Sebi962g00010 432 Gene3D Phosphorylase Kinase; domain 1 102 214 - -
Sebi962g00010 432 Pfam Protein tyrosine and serine/threonine kinase 156 365 IPR001245 GO:0004672|GO:0006468
Sebi962g00010 432 SMART serkin_6 142 409 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi962g00010 432 FunFam probable receptor-like protein kinase At1g80640 215 413 - -
Sebi962g00010 432 ProSiteProfiles Protein kinase domain profile. 142 409 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi962g00010 432 Gene3D Transferase(Phosphotransferase) domain 1 215 413 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi962g00010 Sebi-Chr962 162284 165349 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi962g00010 1 354 Receptor kinase-like Gene Family AT1G80640 47.967 1.28e-111 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-X Sebi962g00010 PK_Tyr_Ser-Thr 4.8e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi962g00010 - - gmx:100811188 708.753