Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi962g00005 ATGGAAGCCGCTGCTATCATGGCCATTGCATTGGCAAATGGAGGGGGTGAGCCACCAGATTGGCAGGATTTTGTTGGAATAGTGGTGTTGCTATTTGTCAACTCAACCATTAGTTTTATAGAGGAAAACAATGCAGGCAATGCTGCTGCAGCACTTATGGCAGGTCTTGCTCCCAAAACCAAGGTTCTGAGAGATGGAAGGTGGAGTGAGCAGGATGCTTCTATATTGGTACCAGGAGACATAATCAGCATCAAATTAGGAGATATCATCCCAGCTGATGCACGTCTCTTGGAAGGAGATGCTCTCAAGATTGATCAATCTGCACTCACTGGTGAGTCCTTGCCTGTTACTAGGAACCCTGGTGATGAAGTCTTCTCTGGCTCCACAGTAAAGCAAGGAGAGATTGAGGCTGTTGTGATTGCCACTGGAATCAACACCTTCTTTGGTAAGGCTGCTCACTTGGTGGACAGCACTAACCAAGTTGGTCATTTCCAAAAGGTGTTGACAGCTATTGGTAACTTCTGTATCTGCTCAATTGCTATTGGCATGATAGTGGAGATTGTTGTCATGTACCCCATTCAGCACCGCAAGTATAGGAAGGGAATTGACAATCTCTTGGTGCTTCTCATTGGAGGGATTCCCATTGCTATGCCAACAGTGTTGTCAGTGACAATGGCTATTGGTTCCCATAAGCTGTCTGAGCAAGGTGCTATCACAAAAAGAATGACAGCCATTGAGGAGATGGCTGGGATGGATGTTTTATGTAGTGACAAGACTGGCACTCTAACACTCAACAAGCTTACTGTTTTCTCAAGAGATACTGACAAGGACACAGTGATTTTACTTGGAGCTAGGGCCTCAAGGGTAGAGAACCAGGATGCTATTGATGCTTGCATTGTTGGAATGTTGGGTGATCCAAAGGAGGCTAGAGAAGGCATTACAGAGGTGCATTTCCTACCCTTCAATCCAGTAGACAAGCGTACAGCCATAACATACTATGACACTGAGGGTAATTGGTACCGAGTAAGCAAAGGAGCACCAGAGCAGATCATAGAACTCTGCAATCTTAGAGAAGATGTGAAGAAGAAAGCTCATTCCATCATTGATAAATTTGCTGATCGTGGTCTTCGTTCCCTTGCTATTTCCAAACAAGAAATTCCAGAAAAGAACAAGGATGGTGCAGGTGGACCATGGCAATTTGTGGGTCTGTTACCTCTCTTTGACCCACCAAGGCATGATAGTGCAGAGACTATCAAGCGTGCCCTTGTTCTTGGAGTGAATGTTAAGATGATCACTGGTGATCAGTTAGCTATTGGCAAAGAAACTGGTCGTAGGCTTGGTATGGGATGTAACATGTACCCTTCATCTTCCCTCCTTGGTGAGCACAAAGATGAGTCTATTGCTGCTCTTCCAGTTGATGAACTCATTGAGAAAGCTGATGGCTTTGCTGGTGTCTTCCCTGAACATAAATATGAGATTGTGAAGAGACTTCAAGATAGGAACCACATATGTGGAATGACCGGAGATGGTGTGAATGATGCTCCTGCTTTGAAAAGGGCAGATATTGGAATTGCAGTGGCTGATGCAACAGATGCAGCTAGAGGTGCATCTGACATAGTCCTCACTGAGCCTGGTTTGAGTGTTATAGTGCATGCAGTGTTGACAAGCAGAGCAATTTTCCAAAGAATGAAGAACTACACTATTTATGCTGTTTCAATTACAATCCGAATAGTACTTGGCTTTATGCTCCTTGCTCTCATTTGGAAATTTGATTTCTCACCTTTTATGGTTTTGATCATTGCCATACTAAATGATGGGACAATCATGACCATTTCCAAGGATAGGGTGAAGCCATCTCCTATGCCAGATTCATGGAAGCTGAGAGAGATTTTTGCCACAGGTGTTGTGCTTGGTGCTTACCTTGCTGTTATGACTGTTGTCTTCTTCTGGGCTGCTCATTCCTCTAATTTCTTCTCGGACAAATTTGGAGTGAGATCTATTAGGAATAACCACAATGAGCTCACAGCAGCTGTTTACCTTCAAATTGCCACAATCATAGCTGTGTATGCAAACTGGGGCTTTGCAAAAATCAAAGGAATTGGATGGGGTTGGGCTGGTGTCATTTGGCTCTACAGTCTTGTTTTTTATGTCCCCATGGATATCCTTAAGTTCATCATAAGATATGCATTGAGTGGCAAGGCATGGAATACTGTTACTGAAAGCAGGATTGCTTTCACCTCTAAGAAAGACTATGGAAGGGGAGAGAGAGAAGCACAATGGGCTGCAGCTCAACGCACACTTCATGGGCTGAATCCTCCTGAAACAGAAGAAATGTTAAATGAAAAGAACAACTATAGAGAGTTGTCTGAACTTGCAGAACAAGCTAGGAAACGTGCTGAAGTTGCAAGGTTAAGGGAGCTTCACACACTAAAGGGGCATGTTGAGTCTGTTGTGAAACTGAAGGGACTTGACATTGAGACAATTCAGCAGCACTACACTGTTTGA 2505 0.4395 MEAAAIMAIALANGGGEPPDWQDFVGIVVLLFVNSTISFIEENNAGNAAAALMAGLAPKTKVLRDGRWSEQDASILVPGDIISIKLGDIIPADARLLEGDALKIDQSALTGESLPVTRNPGDEVFSGSTVKQGEIEAVVIATGINTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIAIGMIVEIVVMYPIQHRKYRKGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHKLSEQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVFSRDTDKDTVILLGARASRVENQDAIDACIVGMLGDPKEAREGITEVHFLPFNPVDKRTAITYYDTEGNWYRVSKGAPEQIIELCNLREDVKKKAHSIIDKFADRGLRSLAISKQEIPEKNKDGAGGPWQFVGLLPLFDPPRHDSAETIKRALVLGVNVKMITGDQLAIGKETGRRLGMGCNMYPSSSLLGEHKDESIAALPVDELIEKADGFAGVFPEHKYEIVKRLQDRNHICGMTGDGVNDAPALKRADIGIAVADATDAARGASDIVLTEPGLSVIVHAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLLALIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPSPMPDSWKLREIFATGVVLGAYLAVMTVVFFWAAHSSNFFSDKFGVRSIRNNHNELTAAVYLQIATIIAVYANWGFAKIKGIGWGWAGVIWLYSLVFYVPMDILKFIIRYALSGKAWNTVTESRIAFTSKKDYGRGEREAQWAAAQRTLHGLNPPETEEMLNEKNNYRELSELAEQARKRAEVARLRELHTLKGHVESVVKLKGLDIETIQQHYTV 834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi962g00005 834 CDD P-type_ATPase_H 18 724 IPR006534 GO:0008553|GO:0016020|GO:0120029
Sebi962g00005 834 Gene3D - 58 142 - -
Sebi962g00005 834 PRINTS P-type cation-transporting ATPase superfamily signature 507 526 - -
Sebi962g00005 834 PRINTS P-type cation-transporting ATPase superfamily signature 255 269 - -
Sebi962g00005 834 PRINTS P-type cation-transporting ATPase superfamily signature 402 413 - -
Sebi962g00005 834 PRINTS P-type cation-transporting ATPase superfamily signature 530 542 - -
Sebi962g00005 834 PRINTS P-type cation-transporting ATPase superfamily signature 424 434 - -
Sebi962g00005 834 PRINTS P-type cation-transporting ATPase superfamily signature 105 119 - -
Sebi962g00005 834 Pfam haloacid dehalogenase-like hydrolase 251 521 - -
Sebi962g00005 834 SUPERFAMILY Calcium ATPase, transduction domain A 58 155 IPR008250 -
Sebi962g00005 834 FunFam Plasma membrane ATPase 400 555 - -
Sebi962g00005 834 PANTHER CALCIUM-TRANSPORTING ATPASE 1 766 - -
Sebi962g00005 834 FunFam Plasma membrane ATPase 58 142 - -
Sebi962g00005 834 SUPERFAMILY Calcium ATPase, transmembrane domain M 2 730 IPR023298 -
Sebi962g00005 834 SFLD Haloacid Dehalogenase 237 559 - -
Sebi962g00005 834 NCBIfam plasma-membrane proton-efflux P-type ATPase 1 684 IPR006534 GO:0008553|GO:0016020|GO:0120029
Sebi962g00005 834 ProSitePatterns E1-E2 ATPases phosphorylation site. 257 263 IPR018303 -
Sebi962g00005 834 PRINTS H+-transporting ATPase (proton pump) signature 364 382 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Sebi962g00005 834 PRINTS H+-transporting ATPase (proton pump) signature 538 563 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Sebi962g00005 834 PRINTS H+-transporting ATPase (proton pump) signature 507 523 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Sebi962g00005 834 PRINTS H+-transporting ATPase (proton pump) signature 479 495 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Sebi962g00005 834 Gene3D - 252 544 IPR023214 -
Sebi962g00005 834 SFLD p-type atpase 237 559 IPR044492 -
Sebi962g00005 834 Coils Coil 778 805 - -
Sebi962g00005 834 Gene3D - 20 686 - -
Sebi962g00005 834 Gene3D - 267 407 IPR023299 GO:0000166
Sebi962g00005 834 FunFam Plasma membrane ATPase 261 407 - -
Sebi962g00005 834 Gene3D - 783 834 - -
Sebi962g00005 834 NCBIfam HAD-IC family P-type ATPase 482 592 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Sebi962g00005 834 NCBIfam HAD-IC family P-type ATPase 27 270 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Sebi962g00005 834 SUPERFAMILY HAD-like 251 555 IPR036412 -
Sebi962g00005 834 Pfam E1-E2 ATPase 57 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi962g00005 Sebi-Chr962 47053 51439 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi962g00005 1 834 Primary Pumps ATPases AT2G07560 78.791 0.0 1388
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi962g00005 K01535 - gmx:100782329 1492.63