Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi961g00004 ATGGCAGAGGTAGCTTTGAATTCAATTGTCAATATCTTACACTTTGCAGCAAAAAGACTCTCCATGAAGCTCTACTCCCCTCCAATGCACAATTTCCTTTTTATCATTGTTATTCTTTCTCCTCTGGTTATTGCTGACCTAAATTCTGATAAGCAAGCCCTTCTTGATTTTTCTGCTGCTGTCCCCCATGGTCGGAACCTTAAGTGGGATCGAGCTACCTCAATCTGTACATCTTGGGTAGGCATCACTTGCAATTCAAATGGCACTCATGTTGTTTCTGTCCGGCTCCCTGGAGTTGGACTAGTGGGCACCATCCCAGCCAATACACTCAGCAAACTTGATTCACTCAAAACTATCAGCCTGCGTTCCAACCTACTCAGTGGAAGTCTACCTCCTGATATTACTTCTCTTCCTTCTCTACAATATCTCTACCTTCAGCATAATAACCTTTCTGGTGATATACCTACCTCATTGTCAGCCCAACTCAATGCACTTGTTTTGTCATACAACTCCTTCACTGGTAGCATTCCTAAGACATTACAAAACTTAACACAACTAACTAGATTGAGCCTTGAGAACAACTCCCTATCGGGACCGATACCTGATCTCAATGTCACTAAGCTTAAGCATTTGAATTTAAGCTACAACCATTTGAATGGTTCTGTCCCTGAAGCTCTTCAGATTTTTCCAAATTCTTCCTTTGAAGGGAACCCTCTCTTATGTGGATTACCTCTAAAATCATGCTCTGGAGTCCCTCCTACATCTCCTCCTGCTTTGACTCCAGCCCCATCATCAACTCCTGCAAGACAAAGCTCCAAAAATAAACTGAGTAAGAAAAAAGATGATGGAAGCCCCACTTCCAGAGCAAATAAAGGGAAGGGTCCTAGTGGTGGGAGGAGTGAAAAGCCAAAAGAAGAGTTTGGAAGTGGGGTGCAAGAACCTGAGAAAAACAAGTTGGTTTTCTTTGAGGGATGCTCTTATAATTTTGACCTTGAGGATTTGCTGAGGGCTTCAGCTGAGGTTTTAGGAAAGGGCAGTTATGGTACTGCATATAAGGCTATCTTGGAGGAGTCAACAACAGTTGTAGTGAAAAGGTTGAAAGAAGTTGTGGTAGGCAAGAGGGAATTTGAACAGCAGATGGAAATTGTGGGAAGGATGGGACAGCACCCAAATGTTGTGCCACTTCGTGCTTATTATTATTCAAAGGATGAGAAGCTTTTGGTTTGCGACTATGTGCCAAATGGCAATCTATCTACCCTCTTGCATGTTAATTCAGATCTGAATTTGATGACAGGTAGTAGGACAGGTGGAAGAACTCCATTAGATTGGAACTCTCGAATAAAAATCTCTCTTGGAATTGCCAGAGGAATTGCTCACATACATTCAGTTGGTGGTCCAAAATTCACACATGGAAATGTTAAATCCTCCAATGTCCTCCTCAGCCAAGATAATGATGGCTGCATTTCTGACTTTGGCCTAACCCCACTTATGAATGTTCCTGCAACCCCTTCTAGAGCCGCAGGTTATCGTGCTCCTGAGGTGATTGAAACCCGGAAGCACACTCATAAATCAGATGTATACAGTTTTGGTGTCCTCCTTTTGGAAATGCTTACAGGGAAAGCACCACAACAGTCTCCGGGACGCGATGACATGGTTGATCTCCCTAGGTGGGTTCAGTCTGTTGTTAGGGAGGAGTGGACAGCTGAGGTTTTTGATGTGGAGCTAATGAGGTACCAAAACATTGAAGAAGAAATGGTGCAAATGTTGCAAATTGCCATGGCCTGTGTGGCAAAGGTTCCTGATATGAGACCTACCATGGAAGAAGTGGTGAGAATGATAGAAGAAATCCGGCAATCTGACTCAGAAAACCGACCATCTTCTGAAGAGAATAAATCAAAGGACTCAACTGTTCAAACTCCATAA 1923 0.4316 MAEVALNSIVNILHFAAKRLSMKLYSPPMHNFLFIIVILSPLVIADLNSDKQALLDFSAAVPHGRNLKWDRATSICTSWVGITCNSNGTHVVSVRLPGVGLVGTIPANTLSKLDSLKTISLRSNLLSGSLPPDITSLPSLQYLYLQHNNLSGDIPTSLSAQLNALVLSYNSFTGSIPKTLQNLTQLTRLSLENNSLSGPIPDLNVTKLKHLNLSYNHLNGSVPEALQIFPNSSFEGNPLLCGLPLKSCSGVPPTSPPALTPAPSSTPARQSSKNKLSKKKDDGSPTSRANKGKGPSGGRSEKPKEEFGSGVQEPEKNKLVFFEGCSYNFDLEDLLRASAEVLGKGSYGTAYKAILEESTTVVVKRLKEVVVGKREFEQQMEIVGRMGQHPNVVPLRAYYYSKDEKLLVCDYVPNGNLSTLLHVNSDLNLMTGSRTGGRTPLDWNSRIKISLGIARGIAHIHSVGGPKFTHGNVKSSNVLLSQDNDGCISDFGLTPLMNVPATPSRAAGYRAPEVIETRKHTHKSDVYSFGVLLLEMLTGKAPQQSPGRDDMVDLPRWVQSVVREEWTAEVFDVELMRYQNIEEEMVQMLQIAMACVAKVPDMRPTMEEVVRMIEEIRQSDSENRPSSEENKSKDSTVQTP 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi961g00004 640 PANTHER OS05G0588300 PROTEIN 33 628 - -
Sebi961g00004 640 ProSitePatterns Protein kinases ATP-binding region signature. 342 373 IPR017441 GO:0005524
Sebi961g00004 640 MobiDBLite consensus disorder prediction 295 312 - -
Sebi961g00004 640 SUPERFAMILY L domain-like 60 247 - -
Sebi961g00004 640 Gene3D Ribonuclease Inhibitor 205 249 IPR032675 -
Sebi961g00004 640 FunFam Leucine-rich repeat receptor-like protein kinase 49 159 - -
Sebi961g00004 640 ProSiteProfiles Protein kinase domain profile. 336 637 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi961g00004 640 FunFam Leucine-rich repeat receptor-like protein kinase 160 248 - -
Sebi961g00004 640 MobiDBLite consensus disorder prediction 615 631 - -
Sebi961g00004 640 CDD STKc_IRAK 342 616 - -
Sebi961g00004 640 Gene3D Transferase(Phosphotransferase) domain 1 412 639 - -
Sebi961g00004 640 FunFam pollen receptor-like kinase 1 304 411 - -
Sebi961g00004 640 Gene3D Ribonuclease Inhibitor 47 204 IPR032675 -
Sebi961g00004 640 MobiDBLite consensus disorder prediction 251 312 - -
Sebi961g00004 640 SUPERFAMILY Protein kinase-like (PK-like) 340 623 IPR011009 -
Sebi961g00004 640 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 412 628 - -
Sebi961g00004 640 Pfam Leucine Rich Repeat 207 229 IPR001611 GO:0005515
Sebi961g00004 640 Gene3D Phosphorylase Kinase; domain 1 304 411 - -
Sebi961g00004 640 Pfam Leucine rich repeat 104 150 IPR001611 GO:0005515
Sebi961g00004 640 Pfam Protein kinase domain 339 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi961g00004 640 Pfam Leucine rich repeat N-terminal domain 48 85 IPR013210 -
Sebi961g00004 640 MobiDBLite consensus disorder prediction 615 640 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi961g00004 Sebi-Chr961 89979 92185 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi961g00004 19 638 Receptor kinase-like Gene Family AT5G58300 65.443 0.0 852
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Sebi961g00004 Pkinase 6.9e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi961g00004 - - gmx:100818344 1034.25