Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi960g00011 GGGGTAGTTATTTTCCATGATGTGTTTGACAATGGATATGATGTTAGTGGTGCTAAAATCAGAGTAGAAGGTGTATATATATGGCCTTTTAGACAGCTTCGAATGGTAGCCAACAGTGGAAAAGAAGGAGAGTCAAATCAGGATGAAGATTATATTTTATCTAATCCATATCATCTGCTTGGAGTTTTCTCATCTCAGGTACTGCAAGATTCTTCACGAGATAAGATGTGGAGGGGAAAACACTCTCTGATGCGTGACATGGAGAAACATTGTAATATTGAAATTGCTGCACAGGTCTCTTTCTTGCAAGTTCTTCTATTGATCCGTCAAATGGAGCATAGCAGCACTCAATCCGGGGCTGCTAAGGTTTCAATATTAATGATTGGCCAGCAAGCAATAATGGATGCCTATCTTTGCCTTTTACACCTGACTGCCGGAATACTAGTCGAATCCTTATTTAATGCTTTTGCAACTGCTGCATTTTTCAAGTTCGTGGTATTCTCAATATTTGAGATGAGATATCTCCTTGCCATCTGGAAGGCAAGTAAGCCTTTGAGTAATGGAGAAGGTTGGGAGACAATGAGGCGTGAACTTTCAGTTTTATACAGTCGTTTCTATGGGATCCTATTGGGAGGCATTCTTCTCATGTATGAGTTCCATAATTATTTGAAACCAATTCTTCTTCTGATGTACTCCTTTTGGATACCTCAGATAATCACCAATGTTATGCGTGATTCACGGAAACCATTGCATCCTCACTATATATTAGGGTTATCAGTTACTCGGCTAGCAATACCATTATATATTTTTGGTTGCCCTAGCAACTTCATGCGTATAGAGTCAGACAAGAGCTGGTGTGTTTGGTTGGCTGTATTTATTGGGATTCAAGCTGCAATTCTTCTACTTCAGCACTATCTTGGATCGCGCTGGTTCATTCCTCGTCAGATTCTACCTGAGAAATACAGCTATTATAGGAGGTTTGATCAGGATACAAGACATTCTATAGACTGTGTTATTTGCATGACAGCCATTGATCTTTCCCAGCGATCTAATGACTGCATGGTGACACCTTGTGATCATTTCTTCCACTCTGGTTGTTTGCAAAGATGGATGGATATAAAGATGGAGTGCCCAACTTGCCGGCGCAGTTTACCACCTGCATAG 1164 0.4055 GVVIFHDVFDNGYDVSGAKIRVEGVYIWPFRQLRMVANSGKEGESNQDEDYILSNPYHLLGVFSSQVLQDSSRDKMWRGKHSLMRDMEKHCNIEIAAQVSFLQVLLLIRQMEHSSTQSGAAKVSILMIGQQAIMDAYLCLLHLTAGILVESLFNAFATAAFFKFVVFSIFEMRYLLAIWKASKPLSNGEGWETMRRELSVLYSRFYGILLGGILLMYEFHNYLKPILLLMYSFWIPQIITNVMRDSRKPLHPHYILGLSVTRLAIPLYIFGCPSNFMRIESDKSWCVWLAVFIGIQAAILLLQHYLGSRWFIPRQILPEKYSYYRRFDQDTRHSIDCVICMTAIDLSQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRSLPPA 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi960g00011 387 SMART ringv_2 336 381 IPR011016 GO:0008270
Sebi960g00011 387 SUPERFAMILY RING/U-box 317 385 - -
Sebi960g00011 387 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 323 387 IPR013083 -
Sebi960g00011 387 Pfam Ring finger domain 336 381 IPR001841 -
Sebi960g00011 387 SMART ring_2 337 380 IPR001841 -
Sebi960g00011 387 CDD RING-H2_TUL1-like 331 386 - -
Sebi960g00011 387 PANTHER RING ZINC FINGER PROTEIN 98 386 - -
Sebi960g00011 387 FunFam E3 ubiquitin-protein ligase, putative 323 387 - -
Sebi960g00011 387 ProSiteProfiles Zinc finger RING-type profile. 337 381 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi960g00011 Sebi-Chr960 201374 208404 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi960g00011 337 384 C3H Transcription Factor Family AT4G12190 37.500 9.33e-08 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi960g00011 K23788 - qsa:O6P43_028826 670.233