LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sebi960g00004	ATGGAGCCAAAGGTGATGATGAGAAGTGACAACAAGGTGAAGAAGGAGGGTATTGGCAACCAAAATGGGCACTCGGAGGAGGATAAGAAGAAGAAAGGGGTGGTGGTAGCTTTTGCTGGGAAGAAAGGTTCTAGTGGTGGCATGCGGTGTTGTCAAGCGGAGAAGTGCAACGCTGATCTTCATGATGCCAAGCAGTATCATAGAAGGCACAAGGTGTGTGAGTATCATGCCAAGGCTCAGGTGGTTCTTGTGGCTGGAACAAGACAACGGTTTTGTCAGCAATGTAGCAGATTCCATGAGTTAGCTGAATTTGATGACACAAAAAGAAGTTGCCGAAGGCGTTTGGCTGGACACAATGAACGGCGAAGAAAGAACTCTGAGTCTCAAGCAGAAGGATCAAACCGCAAAGGGACAGGGCTTCAGTTGAAGGACATTACTTGTGGGCAAGCTGATGATAGGGGGAGAATTCAGATAACAATTCAAGAAAATGGAGCTAATTACAAACATTTTCAGATAAGATGA	522	0.4579	MEPKVMMRSDNKVKKEGIGNQNGHSEEDKKKKGVVVAFAGKKGSSGGMRCCQAEKCNADLHDAKQYHRRHKVCEYHAKAQVVLVAGTRQRFCQQCSRFHELAEFDDTKRSCRRRLAGHNERRRKNSESQAEGSNRKGTGLQLKDITCGQADDRGRIQITIQENGANYKHFQIR	173

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sebi960g00004	173	Gene3D	-	42	112	IPR036893	GO:0003677\|GO:0005634
	Sebi960g00004	173	MobiDBLite	consensus disorder prediction	1	31	-	-
	Sebi960g00004	173	MobiDBLite	consensus disorder prediction	115	139	-	-
	Sebi960g00004	173	PANTHER	SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4	39	129	IPR044817	GO:0003677
	Sebi960g00004	173	Pfam	SBP domain	51	124	IPR004333	GO:0003677
	Sebi960g00004	173	ProSiteProfiles	Zinc finger SBP-type profile.	48	125	IPR004333	GO:0003677
	Sebi960g00004	173	SUPERFAMILY	SBT domain	49	128	IPR036893	GO:0003677\|GO:0005634

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sebi960g00004	Sebi-Chr960	79843	81205	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sebi960g00004	30	173	SBP-box Gene Family	AT3G15270	52.414	1.13e-43	141

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	SBP	Sebi960g00004		SBP	1.3e-31	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sebi960g00004	-		-	ccaj:109810441	237.269