Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi95g00093 ATGAATTTGAAGATGGATTCCGATAGAGCGAAGCTGTTTGTAGGGGGGCATTTCACGGGACACCACCGAAGATATTCTCAAGCACCACTTCGCCAAGTAGAAGTGAAAAAAGCAATACCAAGAAGTGAACAGCAACACCAAAACCAATTACAGAATAGAGGAGGAAGTAACTATAGTAGTTATGACTGTAGCAGTGACCAAATTAGGACTAAAAAGATTTTTGTAGGAGGTTTACCTGCTGGTATATCTGAGGAGGAGTTTAAGAAATACTTTGAGAGGTTTGGTCGAATAACAGATGTAGTAGTGATGCAGGACAGTGTAACTCACAGGCCGAGGGGATTTGGGTTCATCACTTTTGATTCAGAAGAATCTGTGCAAAACGTTATGGTGAAAAATTTCCATGATTTAAATGGTAGACAGGTGGAGGTCAAGAGGGCTGTTCCGAAAGAGGGGAACTCTGGATATGATGGTTTTAATAAATTAAGATATAGGAGTGAAAGAGGAGGAGCTAATAAAAGTTTTTCTCATTATAGTCCTAGAAACATGCTCCCTGGCTTTGCTCCTTTGCCTTGGTATAGTAGTGATGGAGTATATCCGTATGGATCTAACACCTACGGTTGCTGGTACCCTATGGGTGGGTATGGGGGGAATGGATATGCAGTTCCATCTGATGCTTATAGGAACTTCTGGTATGGGCACATGATAGCCAGTCCTCAGGTGCCTTATGCTAATGCTTCGCCGAGTGTTGCATATGTGGGTGGTAGGGTTGGAATGGTAGGTAGTGGTGCTGGGACTTGGGGATACAATGGCATTCTTGGGTCTGCAACGAATTTGAAATTTGAACAACCTTTTAATGCCAATGGATTTGTTCCAGGCAATGTGACACCACCTCATGGTGTAAAGCAGGATGTTGACTCTTCAAGTTTGAAAGTGAGCAATGGTGAAATTTCTAGTTAA 957 0.4242 MNLKMDSDRAKLFVGGHFTGHHRRYSQAPLRQVEVKKAIPRSEQQHQNQLQNRGGSNYSSYDCSSDQIRTKKIFVGGLPAGISEEEFKKYFERFGRITDVVVMQDSVTHRPRGFGFITFDSEESVQNVMVKNFHDLNGRQVEVKRAVPKEGNSGYDGFNKLRYRSERGGANKSFSHYSPRNMLPGFAPLPWYSSDGVYPYGSNTYGCWYPMGGYGGNGYAVPSDAYRNFWYGHMIASPQVPYANASPSVAYVGGRVGMVGSGAGTWGYNGILGSATNLKFEQPFNANGFVPGNVTPPHGVKQDVDSSSLKVSNGEISS 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi95g00093 318 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 22 250 - -
Sebi95g00093 318 MobiDBLite consensus disorder prediction 300 318 - -
Sebi95g00093 318 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 71 148 IPR000504 GO:0003723
Sebi95g00093 318 Gene3D - 28 161 IPR012677 -
Sebi95g00093 318 MobiDBLite consensus disorder prediction 291 318 - -
Sebi95g00093 318 SUPERFAMILY RNA-binding domain, RBD 41 159 IPR035979 GO:0003676
Sebi95g00093 318 MobiDBLite consensus disorder prediction 39 62 - -
Sebi95g00093 318 CDD RRM2_Hrp1p 72 149 - -
Sebi95g00093 318 SMART rrm1_1 72 144 IPR000504 GO:0003723
Sebi95g00093 318 FunFam RNA-binding protein 1 67 157 - -
Sebi95g00093 318 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 73 141 IPR000504 GO:0003723
Sebi95g00093 318 MobiDBLite consensus disorder prediction 42 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi95g00093 Sebi-Chr95 1918257 1919576 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi95g00093 69 210 Eukaryotic Initiation Factors Gene Family AT2G36660 27.273 2.93e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi95g00093 K14411 - gmx:100816822 459.144