Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi95g00090 ATGGGTGATCTTGAAAATGCTATGGCCATGGGGCTCCAACATGGAAAGGAAGGCATTGTGAATTGTCCATTATCAGGTTTGAGGACAAGTGTTTCAGAAATGACCATTAGTTCTGCTGTGTCTTTGGCTACGCCTTCAGGCTTAGCTAATCCTTTTCTTGCTTCTTCTGCTTGGGATCCTCTTGTTTCCTTGAATCAGATTCAAACTCTTAGAGGCTCTCCAATGGTTTCTCATAGTGAGTTTTCCAATTCATCTTACCCTCTTGTTTTGAAAAATCAGGGAATGAGTAGCAACTCCCTCATTGTTCAACACGTGTCTGACTCAAATATTGTGGACATAGTCCCCAATGTTCCCTCCTATGGAAGTGGTAACTTCTCAGAAATGATTGGCTCCTTTGGCCAAACTGGGTCAGGTGATATAGCTAACACAGTGTATCAACCAAATTGTTATCCAAGCAATGTGTCAGCCAAACTGGGTCCTACGAATAATGAGCAATCTCAGGGTGAAGGTTCAACTCCTGAAGAGGGAGAAACAGGATCTGCACTTAATGAAAATAGAAGAAAGCGAGGACTTGACTATAATTCTACTTTCAGTCCAAATAAGAATGCTGAGGGGGATGCAATTGAAGATTCTTCTGGGAAGAGCTTTGATGGTGTGAAAGAACAATATGAAAAGAAACCAAAAGTTGAACAAAATAGTAGTGCAAATTTGCGTGGTAAGCAATTGCTGAAGCAAAAGAAAGATGAGTCTCACAGTGGAGAAGCTCCCAAAGAAAATTTCATTCATGTGAGAGCCCGAAGAGGTCAAGCTACAAACAGTCATAGCCTTGCAGAAAGGGTAAGGAGAGAAAAGATTAGTGAGCGAATGAGGTTGCTTCAAGAACTTGTTCCAGGATGCAACAAGATAATGGGTAAAGCGGTAATGCTTGATGAGATTATCAACTATGTGCAATCACTGCAACAGCAGGTTGAGTTTTTGTCCATGAAACTTGCCATAGTAAACCCAGAGCTGAATTTTGATGCAGAGCGGATCCTCTCCAAAGATGTTCACCGGTCACGCATTGGAAATGGACCTGTTAGTGGATATGGTCCTGGTATCAACTACTCTCATCCATTCCCTTCTAGAAGTTTCCAGGGAACACTAGCGGCCATGCCCAGCACTTCAACACACTTCCCTCCTTTGTCACAGCCTGTTTTGAACCACGAGTTCCAAAGCCTTTATGGAATGACCTATGATTCCAGTTCAACTCTTGACAATTTGGGATCCGAAGGATGGTTGAAAACAGAGTTATAG 1293 0.4246 MGDLENAMAMGLQHGKEGIVNCPLSGLRTSVSEMTISSAVSLATPSGLANPFLASSAWDPLVSLNQIQTLRGSPMVSHSEFSNSSYPLVLKNQGMSSNSLIVQHVSDSNIVDIVPNVPSYGSGNFSEMIGSFGQTGSGDIANTVYQPNCYPSNVSAKLGPTNNEQSQGEGSTPEEGETGSALNENRRKRGLDYNSTFSPNKNAEGDAIEDSSGKSFDGVKEQYEKKPKVEQNSSANLRGKQLLKQKKDESHSGEAPKENFIHVRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKIMGKAVMLDEIINYVQSLQQQVEFLSMKLAIVNPELNFDAERILSKDVHRSRIGNGPVSGYGPGINYSHPFPSRSFQGTLAAMPSTSTHFPPLSQPVLNHEFQSLYGMTYDSSSTLDNLGSEGWLKTEL 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi95g00090 430 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 267 337 IPR036638 GO:0046983
Sebi95g00090 430 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 165 380 IPR024097 GO:0006355
Sebi95g00090 430 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 269 319 IPR011598 GO:0046983
Sebi95g00090 430 Pfam Helix-loop-helix DNA-binding domain 272 320 IPR011598 GO:0046983
Sebi95g00090 430 FunFam Basic helix-loop-helix transcription factor 266 338 - -
Sebi95g00090 430 MobiDBLite consensus disorder prediction 155 179 - -
Sebi95g00090 430 SMART finulus 275 325 IPR011598 GO:0046983
Sebi95g00090 430 MobiDBLite consensus disorder prediction 241 256 - -
Sebi95g00090 430 MobiDBLite consensus disorder prediction 207 228 - -
Sebi95g00090 430 CDD bHLH_AtBPE_like 259 344 - -
Sebi95g00090 430 Gene3D - 266 338 IPR036638 GO:0046983
Sebi95g00090 430 MobiDBLite consensus disorder prediction 155 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi95g00090 Sebi-Chr95 1822771 1825263 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi95g00090 10 430 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G10120 38.498 5.91e-68 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sebi95g00090 HLH 4.2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi95g00090 - - gmx:100801930 538.88