Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi95g00081 ATGGGAAGAGCACCTTGCTGTGACAAAGCAAACGTGAAGAAAGGTCCTTGGTCACCAGAAGAAGATTCCAAACTCAAATCCTACATCGAACAGCACGGAACCGGTGGTCTTAAGCGATGTGGCAAGAGTTGCCGCCTTCGGTGGCTAAACTACCTTCGCCCTAATATCAAGCATGGAGGTTTCTCAGAAGAAGAAGACAACATTATTTGCAGCCTTTACATTAGTATTGGAAGCAGATGGTCGGTTATTGCAGCGCAATTGCCAGGAAGAACTGATAATGATATAAAGAATTACTGGAACACGAGGCTGAAGAAGAAGCTTTTAGGGAAGCACCGTAAGGAACAACAAGCACGTAATAAAAGCAATAGAGGAGGGAATGGGGATTCTTCATCTTTGGTTAGTACTGCAGAGAATAGTACTAACGGTAATAGTCACCAACAACAGGAATATTGGCCTCAGATGCCTGTAGTGGTGCCACCTTTGGCTTATACAACAAACCAATTAGCACTTCCTCCTCCGAGTTTCAACGATCAAGATTCTATTAGGAAATTGTTAATCAAGCTTGGAGGAAGATTCTGTGATGATAATTATTATCAGCCCATCCTTGATGGTTTGAACAATAATCATCTTCAATTCCATGATGATGGTCATGATCTTCTTCCCTCAACACAACAAATTGATCATCATCATTATGATATTGGATCTTCTGGCAACAACAACCAAGTACAATTCTCTCAGACTCATGATCAGTATTGTTGTCCTGTTGAAGGGGCAAGAGAAACTGAAGGTAGTTTCACAGCAGCATTAATAGGGGAGATGGCTACTTCAAGTGATTATTCACAGAGATTAAGTGGGTTGGAGTTTTTGTATGGAGAGGACATGATTAGTGATAATAAGATTACAGTTACAAGCACTAGTCCTATTTGTGGCCAAAGTGGTGCTAACTGGGGTGAGAGCAGTGCTCTGATATATCCTCCTCCAATTGTTGCTTCGAATATTAATTACCAGCAGATCAGTGTGAAGCAAGAGATGCCACAACAAGAATGTGTATTTCAAGAGTTAAGCTACCCTGGGGGTAGTCAATAG 1086 0.4153 MGRAPCCDKANVKKGPWSPEEDSKLKSYIEQHGTGGLKRCGKSCRLRWLNYLRPNIKHGGFSEEEDNIICSLYISIGSRWSVIAAQLPGRTDNDIKNYWNTRLKKKLLGKHRKEQQARNKSNRGGNGDSSSLVSTAENSTNGNSHQQQEYWPQMPVVVPPLAYTTNQLALPPPSFNDQDSIRKLLIKLGGRFCDDNYYQPILDGLNNNHLQFHDDGHDLLPSTQQIDHHHYDIGSSGNNNQVQFSQTHDQYCCPVEGARETEGSFTAALIGEMATSSDYSQRLSGLEFLYGEDMISDNKITVTSTSPICGQSGANWGESSALIYPPPIVASNINYQQISVKQEMPQQECVFQELSYPGGSQ 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi95g00081 361 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 52 IPR017930 -
Sebi95g00081 361 Gene3D - 13 57 - -
Sebi95g00081 361 CDD SANT 16 103 IPR001005 -
Sebi95g00081 361 MobiDBLite consensus disorder prediction 120 148 - -
Sebi95g00081 361 SUPERFAMILY Homeodomain-like 11 99 IPR009057 -
Sebi95g00081 361 ProSiteProfiles Myb-like domain profile. 9 103 IPR001005 -
Sebi95g00081 361 FunFam Transcription factor RAX3 7 58 - -
Sebi95g00081 361 Gene3D - 60 128 - -
Sebi95g00081 361 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 53 107 IPR017930 -
Sebi95g00081 361 Pfam Myb-like DNA-binding domain 59 101 IPR001005 -
Sebi95g00081 361 Pfam Myb-like DNA-binding domain 14 52 IPR001005 -
Sebi95g00081 361 SMART sant 57 105 IPR001005 -
Sebi95g00081 361 SMART sant 13 54 IPR001005 -
Sebi95g00081 361 MobiDBLite consensus disorder prediction 109 148 - -
Sebi95g00081 361 FunFam Transcription factor RAX3 60 130 - -
Sebi95g00081 361 PANTHER OS09G0431300 PROTEIN 1 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi95g00081 Sebi-Chr95 1553622 1554903 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi95g00081 1 187 MYB Transcription Factor Family AT3G49690 60.199 1.96e-73 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sebi95g00081 Myb_DNA-binding 5.1e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi95g00081 K09422 - gmx:778079 412.92