Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi95g00079 ATGGGTTATGATATCTCAAACTCATCAAACCCAGGCCTTCTTCGACTCGGTCTTGGTCTTGGCTTCCGCGATCAATCCTCAGAGAATTGCATGAAGACCGATGAACCCAAGCAGCAGAGGAATAATAAGAAAAAGGAAGAGGATCATCATCCATGTAATAATAAGGCATATCCTTCTCTTACATTAGGACTCCCTCATGATCATGATCAACTAGTTGTGGCTACAAAGACAGATCAATCCGATGATCAGTTTTTTCATCCACACGCTATATCTTCTCCAAGCGCTGTTTCTTCATTCTCCAACTCTTCTGGTATCAAGAGGGAGAGAGATCAGTTCTCAGGAGAATTAGAAGAACTTGAGGTTGAGGTTGAGGTAGAGGGAGAGAAGATTTCATCAACGGTTGATGAAAATGGTAATCCCAAGAAGAAACTAAGGCTCACCAAAGATCAATCCGCTGTCTTAGAGGATAGCTTCAAACAGCATTCTACTCTCAATCCGAAACAAAAGCAAGAATTGTCAAGGAAGCTGAATCTGCGGGAGAGACAAGTGGAGGTGTGGTTTCAGAACAGGAGAGCCAGGACAAAATTGAAGCAAACGGAAGTGGAATGTGAGTTACTGAAGAAGTGCTGTGAGAGTCTAAGAGAGGAGAACAAGAGGCTGCAAAAGGAGCTGCAAGAGCTTAAATCGATGAAAACGACGACGTCTGGAGGACCCTTTTATATGCAGCTTCCAGTAGCCAGCCTTAGCATCTGTCCTTCTTGTAAGAGAATTAGCGGTGACGGAGGCAGCGGCAACAATAACAATGGATCTAATTCTCCGATTACCACGGCCTTGCTTATTGGCCCAAATAAGGCCCAACATCATCACTTCTATACATTCACCCAATCATCCGCAGCTTGTTAG 903 0.4408 MGYDISNSSNPGLLRLGLGLGFRDQSSENCMKTDEPKQQRNNKKKEEDHHPCNNKAYPSLTLGLPHDHDQLVVATKTDQSDDQFFHPHAISSPSAVSSFSNSSGIKRERDQFSGELEELEVEVEVEGEKISSTVDENGNPKKKLRLTKDQSAVLEDSFKQHSTLNPKQKQELSRKLNLRERQVEVWFQNRRARTKLKQTEVECELLKKCCESLREENKRLQKELQELKSMKTTTSGGPFYMQLPVASLSICPSCKRISGDGGSGNNNNGSNSPITTALLIGPNKAQHHHFYTFTQSSAAC 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi95g00079 300 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 18 266 - -
Sebi95g00079 300 CDD homeodomain 140 198 IPR001356 GO:0003677
Sebi95g00079 300 ProSitePatterns 'Homeobox' domain signature. 172 195 IPR017970 GO:0000981|GO:0006355
Sebi95g00079 300 SMART halz 197 243 IPR003106 GO:0006355|GO:0043565
Sebi95g00079 300 MobiDBLite consensus disorder prediction 28 53 - -
Sebi95g00079 300 Gene3D - 133 202 - -
Sebi95g00079 300 SMART HOX_1 139 201 IPR001356 GO:0003677
Sebi95g00079 300 SUPERFAMILY Homeodomain-like 138 205 IPR009057 -
Sebi95g00079 300 Coils Coil 102 129 - -
Sebi95g00079 300 Pfam Homeodomain 141 195 IPR001356 GO:0003677
Sebi95g00079 300 ProSiteProfiles 'Homeobox' domain profile. 137 197 IPR001356 GO:0003677
Sebi95g00079 300 Pfam Homeobox associated leucine zipper 197 231 IPR003106 GO:0006355|GO:0043565
Sebi95g00079 300 Coils Coil 196 233 - -
Sebi95g00079 300 MobiDBLite consensus disorder prediction 24 55 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi95g00079 Sebi-Chr95 1445387 1446923 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi95g00079 55 300 Homeobox Transcription Factor Family AT2G22800 52.549 2.55e-58 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Sebi95g00079 Homeodomain 2.2e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi95g00079 K09338 - gmx:100790927 298.901