LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sebi95g00077	ATGGAGGAATACACTAATAACCATCACTTAAGTCCAAGTCCAACGGCAAATTTGTTATACTCTTCCGCTGGTGGTTCAAGCATAGGAAACCGCCATCTTCATGTTCCTATCAACACCTTTCATCTTCAATCCGGTTCTGGATCGGATCACTGCTTTCAATCCAACAGCAATAACTCACCGATTTTCCACTATCCTTTAATGAGAGGAAATCTTGTGCAAGAAGGAGGGAGCCAGCAGAGCTCTAATGAAGTTGAAGCCATAAAAGCCAAAATCATTGCTCATCCTCAATACTCCAATCTTTTACAAGTTTACATGGATTGCCAAAAGGTTGGAGCGCCGCCTGAAGTGGCGGCGCGTTTGGCTGAGGTTGGACAGGATTTTGAGGCGCGGCAGCGATCTACGGTTAGTTCATCAAGGGAAAGTAGCAAGGATCCAGAGCTTGACCAATTCATGGAAGCTTATTATGACATGCTTGTGAAGTACCGTGAGGAATTAACGAGGCCTATACAAGAGGCGATGGATTTCATGCGGAGGATAGAAACTCAACTCAACATGCTTCGCAATAATGGACCCCTTCGGATCTTCTCTGATGATAAATGTGATGAAGTTGGTTCATCGGAAGATGATCAAGAGAACAGTGGTGGAGAAACAGAACCGCTAGAGATTGATCCACGAGCTGAAGACCGTGAACTAAAAAACCACTTGCTCAAGAAGTATAGCGGTTACTTAAGTAGCCTAAAGCAAGAGCTTTCAAAGAAAAAGAAAAAAGGAAAACTACCTAAAGATGCTAGGCAAAAGCTTCTTAGCTGGTGGGAATTACATTACAAATGGCCATATCCTTCGGAATCTGAAAAGGTGGCGTTGGCTGAATCAACCGGTTTGGATCAGAAGCAAATAAATAACTGGTTCATAAATCAAAGGAAGAGGCACTGGAAACCATCTGAAGACATGCAACTTATGGTGATGGATGGCCTGCATCCACATAACGCATCTCTCTACATGGATGGCCATTACATGACTGATGGTCATTACCGATTTGGGCCATAA	1047	0.4355	MEEYTNNHHLSPSPTANLLYSSAGGSSIGNRHLHVPINTFHLQSGSGSDHCFQSNSNNSPIFHYPLMRGNLVQEGGSQQSSNEVEAIKAKIIAHPQYSNLLQVYMDCQKVGAPPEVAARLAEVGQDFEARQRSTVSSSRESSKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFMRRIETQLNMLRNNGPLRIFSDDKCDEVGSSEDDQENSGGETEPLEIDPRAEDRELKNHLLKKYSGYLSSLKQELSKKKKKGKLPKDARQKLLSWWELHYKWPYPSESEKVALAESTGLDQKQINNWFINQRKRHWKPSEDMQLMVMDGLHPHNASLYMDGHYMTDGHYRFGP	348

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sebi95g00077	348	PANTHER	HOMEOBOX PROTEIN TRANSCRIPTION FACTORS	70	318	-	-
	Sebi95g00077	348	MobiDBLite	consensus disorder prediction	202	216	-	-
	Sebi95g00077	348	Gene3D	-	255	317	-	-
	Sebi95g00077	348	Pfam	ELK domain	230	251	IPR005539	GO:0003677
	Sebi95g00077	348	SMART	HOX_1	252	317	IPR001356	GO:0003677
	Sebi95g00077	348	Pfam	KNOX2 domain	142	186	IPR005541	GO:0003677\|GO:0005634
	Sebi95g00077	348	SUPERFAMILY	Homeodomain-like	251	326	IPR009057	-
	Sebi95g00077	348	Pfam	KNOX1 domain	86	128	IPR005540	GO:0003677\|GO:0005634
	Sebi95g00077	348	Pfam	Homeobox KN domain	270	309	IPR008422	GO:0003677\|GO:0006355
	Sebi95g00077	348	SMART	ELK_2	230	251	IPR005539	GO:0003677
	Sebi95g00077	348	ProSitePatterns	'Homeobox' domain signature.	288	311	IPR017970	GO:0000981\|GO:0006355
	Sebi95g00077	348	SMART	KNOX1_2	85	129	IPR005540	GO:0003677\|GO:0005634
	Sebi95g00077	348	FunFam	Homeobox protein knotted-1-like 2	255	317	-	-
	Sebi95g00077	348	ProSiteProfiles	ELK domain profile.	230	250	IPR005539	GO:0003677
	Sebi95g00077	348	ProSiteProfiles	'Homeobox' domain profile.	250	313	IPR001356	GO:0003677
	Sebi95g00077	348	MobiDBLite	consensus disorder prediction	197	227	-	-
	Sebi95g00077	348	SMART	KNOX2_2	137	188	IPR005541	GO:0003677\|GO:0005634
	Sebi95g00077	348	Coils	Coil	169	189	-	-
	Sebi95g00077	348	CDD	homeodomain	262	314	IPR001356	GO:0003677

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sebi95g00077	Sebi-Chr95	1402428	1406752	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sebi95g00077	48	348	Homeobox Transcription Factor Family	AT4G08150	70.062	5.13e-145	414

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HB-KNOX	Sebi95g00077		KNOX2	2.6e-24	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sebi95g00077	-		-	aprc:113866252	529.25