Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi95g00050 ATGGACAATGATATGTACATTTCTCCTCTGGACATTTCTGGCCGAGATTCTACTGTAGTAGATGAAATTTCACAACATTCCACCTCAAATCCACTCATTCAGTGCTATTCATTTGACCTTAATAACCAATCCCATCTCATAAATGGAATTCCAATGCTTGCTGGAGATCAAGGTGAACCTATAAGCAATGTCCAAGCTGATGTTTGCTTCACAAATCCTACAAGTATTGCTGACTCTAGTTCATTAGTTACATCACAAGGAAAGACAAGTGTGGAAGATGCCTCAAATTCCATGGAGAACAGTGAGTTTCAAGAGTATTTAGCTGGAGGAATGCCAATCACTCCTGCTTCACTTGCAGCCATTCTTGCTGCTAGAATTGGTCTTGAAGAAAATTTAGAGAATTCAGCAGCTTTGCCTCCTTCACTCTGCTCCATGGGGGCACTGGGGCCTTTCTTTAATAATTGGCAAGGCACATCAAACCCTTTATCTGTAACCTTTGAGGACCATAGTTACAATGAAGTACCTGGGAATGTCAACGAGTCTCCTAGAGCTCCAGAGCTTTATGAAACTGGGTGCCAACCTTATTCTTCCTTAGGAAACCTGGATTCAGATGGATGGACAGAACCAAATGTAGCAAACATGACCAATCATTCTTACCATTCTTCTAAATATAGTAATGAACTTTCTCTAAGTCTTGCAACATCTACAAGCCCAGGACAGTGTTCAGAGGTCAGTTGCTCTGATGTGACCCAATGCATGAATGGAACCATGTCAGGCTTGGAGCAAGCCTCTTGCAGCAGTACTAGGGAACTTTCTATGAGTTTGGGGTATGACAAATATGTCCAGTTTTCACCAGAAGTATTGAGATCAAGATATCTTGTTGGAATTCAAGACATACTTGCTCAAATTGCAAGATATTCATTTGATAATCTGGAACAGATAAATTGTTCAGCTGCTGGCAATAGAAATAAATCAACTCCTGCTTTCCCACCCAAGAGAAGGATACTGGTAAATCACAATGCAGATCCTATGTATGAAGCTCATGCAGAATCTCAATTGCAAGGGCATGCAGCTGAATCAACGAAATCCCAACAACTGCTGACACTTCTACAACTGGTGGACAATCGATATAGCCAGTGTTTGGATGAGATACATACTGTTGTATCCGCATTCCATGCTGCTACAGAGCTGGATCCACAAATACATGCACAATTTGCTCTCCAAACAATTTCTGTTCTATACAAGGACTTGCGAGAGAGGATTAGCAATCATATCCTTGCCATAGGACCAAATTTTAACAACTTTTGCTCAGAAGAGCAAGAATGGTCTGTTGAAACATCATTCCTTCAAAAGCAATGGGCTTTCCAACAGTTGAAAAGAAAAGATCATCAATTATGGAGGCCCCAAAGAGGCTTACCCGAAAGATCCGTCTCAGTTTTAAGAACTTGGATGTTTCAGAATTTCCTTCATCCATATCCTAAAGATGCAGAGAAGCATTTGCTTGCAGTAAAAAGTGGGTTGACGAGAAGCCAGGTATCCAATTGGTTTATAAATGCTCGTGTTCGACTGTGGAAACCTATGATTGAGGAAATGTATAGTGAAATGAATAAAAGAAAGGCGTGTCGAAATGGAGAAGGAATGGAGAACAGCCACGGAAACAGCACTGCACTTGTAGAAATTGCCGTAAAGACAGGACTTATGAAATCTGCCGGTTAA 1716 0.4097 MDNDMYISPLDISGRDSTVVDEISQHSTSNPLIQCYSFDLNNQSHLINGIPMLAGDQGEPISNVQADVCFTNPTSIADSSSLVTSQGKTSVEDASNSMENSEFQEYLAGGMPITPASLAAILAARIGLEENLENSAALPPSLCSMGALGPFFNNWQGTSNPLSVTFEDHSYNEVPGNVNESPRAPELYETGCQPYSSLGNLDSDGWTEPNVANMTNHSYHSSKYSNELSLSLATSTSPGQCSEVSCSDVTQCMNGTMSGLEQASCSSTRELSMSLGYDKYVQFSPEVLRSRYLVGIQDILAQIARYSFDNLEQINCSAAGNRNKSTPAFPPKRRILVNHNADPMYEAHAESQLQGHAAESTKSQQLLTLLQLVDNRYSQCLDEIHTVVSAFHAATELDPQIHAQFALQTISVLYKDLRERISNHILAIGPNFNNFCSEEQEWSVETSFLQKQWAFQQLKRKDHQLWRPQRGLPERSVSVLRTWMFQNFLHPYPKDAEKHLLAVKSGLTRSQVSNWFINARVRLWKPMIEEMYSEMNKRKACRNGEGMENSHGNSTALVEIAVKTGLMKSAG 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi95g00050 571 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 217 545 - -
Sebi95g00050 571 Pfam Homeobox KN domain 483 522 IPR008422 GO:0003677|GO:0006355
Sebi95g00050 571 Pfam Associated with HOX 287 422 IPR006563 -
Sebi95g00050 571 SUPERFAMILY Homeodomain-like 468 535 IPR009057 -
Sebi95g00050 571 ProSiteProfiles 'Homeobox' domain profile. 463 526 IPR001356 GO:0003677
Sebi95g00050 571 SMART prehox3 281 423 IPR006563 -
Sebi95g00050 571 SMART HOX_1 466 530 IPR001356 GO:0003677
Sebi95g00050 571 CDD homeodomain 466 527 IPR001356 GO:0003677
Sebi95g00050 571 Gene3D - 469 548 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi95g00050 Sebi-Chr95 974005 976556 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi95g00050 221 539 Homeobox Transcription Factor Family AT4G32980 53.918 1.19e-101 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Sebi95g00050 POX 1.4e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi95g00050 - - gmx:100820354 871.692