Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi956g00001 ATGCAAGTGGCAGCAGAAGTTCAACAGCACCATCACCAAAGGCACCAAGACACCCAGATGTGTAGGAAGATCCAACTCAGTATCACTGATCACAACACCGTTGATGATGGTGGCTGTGACAATATGGACGGTGAGGATCTCTTCATCCCACCCCTCAATTTTGCCATGGTTGATAACGGCATTTTCCGCTCTGGTTTCCCTGAACCCGCCAACTTCTCCTTCCTCCAAACCCTTGGCCTCCGCTCCATCATATATTTGTGTCCTGAACCATATCCGGAGGCTAACATGGAGTTCCTCAAGTCAAATGGGATCAAGCTTTATCAGTTTGGGATTGAGGGTCATAAGGAACCTTTTGTAAACATCCCAGAGGACACAATCCGTGAAGCACTAAAAGTTGTCCTTGATGTGAGGAACCATCCAGTTATAATTCATTGTAAGAGAGGAAAGCACCGAACAGGTTGTTTAGTAGGATGCTATAGAAAATTGCAAAAATGGTGCTTGTCATCTGTGTTTGATGAGTACCAGCGCTTTGCAGCTGCGAAAGCAAGAGTTTCAGATCAGAGGTTTGTAGAGTTGTTTGATATTTCAAGCATGAAGCATTTACCAATCCCATTTTCATGTTTGAAGAGGTAA 633 0.4439 MQVAAEVQQHHHQRHQDTQMCRKIQLSITDHNTVDDGGCDNMDGEDLFIPPLNFAMVDNGIFRSGFPEPANFSFLQTLGLRSIIYLCPEPYPEANMEFLKSNGIKLYQFGIEGHKEPFVNIPEDTIREALKVVLDVRNHPVIIHCKRGKHRTGCLVGCYRKLQKWCLSSVFDEYQRFAAAKARVSDQRFVELFDISSMKHLPIPFSCLKR 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi956g00001 210 FunFam probable tyrosine-protein phosphatase At1g05000 47 197 - -
Sebi956g00001 210 PANTHER TYROSINE-PROTEIN PHOSPHATASE 34 199 - -
Sebi956g00001 210 Pfam Tyrosine phosphatase family 49 200 IPR004861 -
Sebi956g00001 210 ProSiteProfiles Dual specificity protein phosphatase domain profile. 53 204 IPR020422 GO:0006470|GO:0008138
Sebi956g00001 210 ProSitePatterns Tyrosine specific protein phosphatases active site. 143 153 IPR016130 GO:0016311|GO:0016791
Sebi956g00001 210 Gene3D Protein tyrosine phosphatase superfamily 47 197 IPR029021 -
Sebi956g00001 210 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 49 195 IPR029021 -
Sebi956g00001 210 CDD PFA-DSP_Siw14 47 194 - -
Sebi956g00001 210 PRINTS Plant and fungal dual specificity phosphatase signature 85 98 IPR020428 GO:0016791
Sebi956g00001 210 PRINTS Plant and fungal dual specificity phosphatase signature 104 118 IPR020428 GO:0016791
Sebi956g00001 210 PRINTS Plant and fungal dual specificity phosphatase signature 48 65 IPR020428 GO:0016791
Sebi956g00001 210 PRINTS Plant and fungal dual specificity phosphatase signature 121 135 IPR020428 GO:0016791
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi956g00001 Sebi-Chr956 1568 4096 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi956g00001 30 210 Protein tyrosine phosphatase (PTP) family AT4G03960 72.376 1.23e-99 285
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi956g00001 K18045 - gmx:100814279 382.874