Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi94g00102 ATGGGCCGGGTAAAGTTAAAGATAAAGAGGTTGGAGAACACTAATGGTCGTCAAGCAACTTATGCTAAAAGGAAAAATGGAATCATGAAAAAAGCTACTGAATTATCTATACTATGTGATATAGATATTATACTTCTCATGTTCTCACCGAGTGGAAAGCCTTCAATATGTAGGGGGAGGCGCAGTAACTTGGAGGAGGTTATTGCAAAATTTGCTCAGCTAACTCCACAAGAAAGAGCAAAGAGGAAGTTGGAGAGTCTTGAAGTACTAAAGAAAACATTTAAGAAGTTAGATCACGATGTTAATATACAAGATTTTTTGGGAACAAGTAGTCAAACTATTGAGGTAAATCAGCTGGATTACTTTTCTTATTTGTTCTTTAGTGTTATACCTTTCACCGATTGGCTTTGTGTAGGACCTAACCATTGGACTGAACTTGATAAAGTTAGTAATGTGAATCAATTGGAACAGATGGAAAACTCACTTAAGCAGTCTCTTAATCAAATTCAAACTCATAAGGAAAATATACAAAAGCAACAACTTGCGTCACTACAGTGCCATAATCAGTTCAATGAAATGCACATTCCTTTTAGAATGAGTGCTCAACAACATCTCCAACCTCTATCATGGATTGCTAATGGTGACAACCAAAATATAGTTTTACCTGAGGATTCAAACTTGCTTATGCACAAAGATGTAGAGGGTTCTACAAGCTCTTCTTTTGGGAGTTATGCCAATTATCTTGGATCAAGTACAAAAACAGATATTTCCATTAATTCTGGACAAGAAAATGGTGTCCTTAGTGATATGGGCAATAGTACTACTCCTGTGAGATTACAATTAAATGGCCAGATTCCATACATGCCAAACAATTTCAACATATTAAATGATATGAAGCTCCAACCAATTGTGGGCATGAACCCACATGAAAACCGTGTGGATTATCATGTGAATGGAAGCTTTGAGACACCTAGACCAGGGTATGACTCTAATCACCATGGATGGACTTCCACGTCAGGGCCTTGTGTTGCTACTATGTTTGATGAGCATTTGTATGACCAACCAAGTTTTCCTCATATGCATTTTAGCTACTCATAG 1098 0.3707 MGRVKLKIKRLENTNGRQATYAKRKNGIMKKATELSILCDIDIILLMFSPSGKPSICRGRRSNLEEVIAKFAQLTPQERAKRKLESLEVLKKTFKKLDHDVNIQDFLGTSSQTIEVNQLDYFSYLFFSVIPFTDWLCVGPNHWTELDKVSNVNQLEQMENSLKQSLNQIQTHKENIQKQQLASLQCHNQFNEMHIPFRMSAQQHLQPLSWIANGDNQNIVLPEDSNLLMHKDVEGSTSSSFGSYANYLGSSTKTDISINSGQENGVLSDMGNSTTPVRLQLNGQIPYMPNNFNILNDMKLQPIVGMNPHENRVDYHVNGSFETPRPGYDSNHHGWTSTSGPCVATMFDEHLYDQPSFPHMHFSYS 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi94g00102 365 CDD MADS 2 54 - -
Sebi94g00102 365 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Sebi94g00102 365 Gene3D - 14 96 IPR036879 GO:0003677|GO:0046983
Sebi94g00102 365 ProSiteProfiles MADS-box domain profile. 1 53 IPR002100 GO:0003677|GO:0046983
Sebi94g00102 365 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 204 - -
Sebi94g00102 365 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 54 IPR002100 GO:0003677|GO:0046983
Sebi94g00102 365 Coils Coil 152 182 - -
Sebi94g00102 365 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Sebi94g00102 365 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Sebi94g00102 365 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Sebi94g00102 365 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Sebi94g00102 365 FunFam Agamous-like MADS-box protein AGL30 14 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi94g00102 Sebi-Chr94 1691710 1695560 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi94g00102 1 358 Type I MADS-box Gene Family AT2G03060 44.924 4.22e-90 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Sebi94g00102 SRF-TF 2.5e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi94g00102 - - lang:109356063 538.11