Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi94g00093 ATGGCTTCCGAGCCTGATGTCTCTGAGATTTCCTCTCTGTTCGAAAGGCCGGTGAGAAACAGAGACATGTCTCTGTTTTTGCCCTTAATCTTTGGCTTCTCAGACGCTTCTCCTAGGACAGATAGGGAGGAGGACCCAGATCAGGAAACTGAGAGAAATGAAGATTCTCAGCATCAAAGAATCATCTTGGTGAACCCCTTCACACAGGGCATGGTGGTAATTGATGGGGCTTCAAGCCTTGAGGCTCTGTTCCGCGAGCTTGGGAATACCAAGGGTGGTCGACCACCGGCTTCCAAGGAATCCATAGACGCTATGCTGAGTGTTGAAATTGGAGAAAGTGAAGATGGGGAGTGTGTAGTTTGTCTGGAGGAGTTTGAGGTTGGTGGGGTGGTAAAAGAGATGCCTTGTAAGCATAGGTTTCATCAAAATTGCATTGAGAAGTGGCTGGGGATTCATGGGTCTTGCCCTGTTTGCAGGAGAAGCCAGGATCAAAATCAAGCTCCTCCTGCTGATGATTCAAGTGATTCTTCATCAAGTCCTAGCGGTGATGCTGCTGAGGTAGAGAATTGA 570 0.4825 MASEPDVSEISSLFERPVRNRDMSLFLPLIFGFSDASPRTDREEDPDQETERNEDSQHQRIILVNPFTQGMVVIDGASSLEALFRELGNTKGGRPPASKESIDAMLSVEIGESEDGECVVCLEEFEVGGVVKEMPCKHRFHQNCIEKWLGIHGSCPVCRRSQDQNQAPPADDSSDSSSSPSGDAAEVEN 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi94g00093 189 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 44 160 - -
Sebi94g00093 189 SUPERFAMILY RING/U-box 102 165 - -
Sebi94g00093 189 Pfam Ring finger domain 117 159 IPR001841 -
Sebi94g00093 189 MobiDBLite consensus disorder prediction 37 57 - -
Sebi94g00093 189 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 85 164 IPR013083 -
Sebi94g00093 189 SMART ring_2 118 158 IPR001841 -
Sebi94g00093 189 MobiDBLite consensus disorder prediction 160 189 - -
Sebi94g00093 189 FunFam E3 ubiquitin-protein ligase RNF181 86 165 - -
Sebi94g00093 189 MobiDBLite consensus disorder prediction 35 57 - -
Sebi94g00093 189 ProSiteProfiles Zinc finger RING-type profile. 118 159 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi94g00093 Sebi-Chr94 1557467 1558150 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi94g00093 1 159 C3H Transcription Factor Family AT1G26800 54.491 2.05e-52 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi94g00093 - - pcin:129321278 234.572