Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi94g00082 ATGAGCGATCACTTGGTCCTGTTCGTTGACCGTCTCGCGCGCCCTGTCCCCGTTGACCCCGTCGCGCAGCCCGCCCAGCTCCCTTCCGAACCCTCTCCCTCTCCGGCGACCGCAGATGCTGCCTCCGCCGCCGGGCCCTCCGCCTCCTCCCAGCCGGCAGATCGCGATGGCGAGGGTTGTGATGAGGAGGAGCCGCTGATCCAGATGGCAGAGTGCCGAATCTGCCAGGAGGAGGACAGTGCTTCCAATTTGGAGACGCCCTGCGCATGCAGCGGCAGTCTCAAGTATGCTCACAGAAAGTGCGTCCAGCATTGGTGCAATGAGAAAGGAGACATAATTTGTGAGATATGTCATCAGGATGGAATATGGGATGCCTGCTACCCCGCTACAATTCTAGAGTGTTGCTTCTTTAGCCCGAATGAGGATGCATATGTTCCCCTTATCAACCTGGGTATACTGCCCCCCCCACCACGCCCTCATCCCGAAGAAACTACCATTGATATAGGAGGAGGCTGGACAATATCTGGCACGCCTTTGGACTTGCGTGATCCTCGACTGTTGGCAATTGCAGAGGCAGAACGTCAATTCTTGGATGCTGAATATGATGAGTATGCTGCTTCTAATGCAAGTGGAGCTGCATTTTGCCGCTCAGCTGCTCTAATTTTGATGGCCCTTTTACTCTTGCGACATGCACTCTCTGTCACTGATGGTGATGCTTCTGATGATGATCCATCCAATTTTTCTCTCTTTTCTTGCTTCGAGCTGCTGGATTTCTTTTACCTTGCTATATTATGGCTTGGGCAATCAGTATTCTGCAACGCCGGCGACAAAGACAAAAAGATTTGCCCTAGTATTTTCTGTGAATTTCTTACGGTTTTGTATTATGGACAGGAGGCTGCGGCACTAGCAGCCACACAAGTTGCTTTTGTTCTACAATCTGGGCAGCGTAGAGGTCTACAGTTTGCTATAGCACCAGCACCAGGTCCTACAGTACACCAGGAACAAGTGTAG 1011 0.5213 MSDHLVLFVDRLARPVPVDPVAQPAQLPSEPSPSPATADAASAAGPSASSQPADRDGEGCDEEEPLIQMAECRICQEEDSASNLETPCACSGSLKYAHRKCVQHWCNEKGDIICEICHQDGIWDACYPATILECCFFSPNEDAYVPLINLGILPPPPRPHPEETTIDIGGGWTISGTPLDLRDPRLLAIAEAERQFLDAEYDEYAASNASGAAFCRSAALILMALLLLRHALSVTDGDASDDDPSNFSLFSCFELLDFFYLAILWLGQSVFCNAGDKDKKICPSIFCEFLTVLYYGQEAAALAATQVAFVLQSGQRRGLQFAIAPAPGPTVHQEQV 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi94g00082 336 SUPERFAMILY RING/U-box 70 119 - -
Sebi94g00082 336 CDD RING_CH-C4HC3_MARCH 72 118 - -
Sebi94g00082 336 ProSiteProfiles Zinc finger RING-CH-type profile. 64 124 IPR011016 GO:0008270
Sebi94g00082 336 MobiDBLite consensus disorder prediction 17 61 - -
Sebi94g00082 336 Pfam RING-variant domain 72 117 IPR011016 GO:0008270
Sebi94g00082 336 SMART ringv_2 71 118 IPR011016 GO:0008270
Sebi94g00082 336 Coils Coil 187 207 - -
Sebi94g00082 336 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 60 124 IPR013083 -
Sebi94g00082 336 Pfam Protein of unknown function (DUF3675) 155 250 IPR022143 -
Sebi94g00082 336 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 259 IPR033275 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi94g00082 Sebi-Chr94 1421547 1424968 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi94g00082 71 118 C3H Transcription Factor Family AT2G37950 41.176 1.74e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi94g00082 - - gmx:100779674 360.918