Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi94g00055 ATGTCATTTTCATCAGGAATTGAACTTGGAGAAGAAGCTAATGCTGAGGAAGATTTGTCTGATGATGGATCACAAGCAGGGGAGAAAAAAAGGAGGCTTAACATGGAACAAGTGAAGACACTTGAGAAGAGCTTTGAGTTGGGAAATAAGCTTGAACCAGAGAGGAAAATGCAGCTTGCAAGAGCTCTTGGATTGCAGCCTAGACAGATTGCTATATGGTTCCAAAACAGAAGGGCTAGGTGGAAGACCAAGCAGTTGGAGAAAGACTATGATGTCCTTAAAAAACAATATGAAGCTATTAAGTCAGATAATGATGCACTTCAAGCTCAGAACCAAAAACTTCAGGCAGAGATATTGGCACTGAAAAATAGAGAGCCAACTGAATCTATAAACCTTAATAAAGAAACAGAAGGATCCTGCAGCAACAGAAGTGAGAACAGCTCAGACAACATCAAGTTGGATATCTCAAGGACACCAGCTATTGATAGTCCTTTATCTACACATCACCACAGCAGAACCTTCTTTCCACCCTCTGCTAGGCCTACAACAGTTGCTCAGCTTTTTCAAACTTCCTCAAGGCCAGATCACCAATGCCAAAAGATTGATCAACTGGTCAAAGAAGAAACCTTAAGCAGCATGTTTTGTGGCATGGATCAGGATGATCAATCTGGGTTTTGGCCATGGTTGGAGCAGCATAATTTCAATTGA 708 0.4138 MSFSSGIELGEEANAEEDLSDDGSQAGEKKRRLNMEQVKTLEKSFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDVLKKQYEAIKSDNDALQAQNQKLQAEILALKNREPTESINLNKETEGSCSNRSENSSDNIKLDISRTPAIDSPLSTHHHSRTFFPPSARPTTVAQLFQTSSRPDHQCQKIDQLVKEETLSSMFCGMDQDDQSGFWPWLEQHNFN 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi94g00055 235 MobiDBLite consensus disorder prediction 132 152 - -
Sebi94g00055 235 MobiDBLite consensus disorder prediction 129 152 - -
Sebi94g00055 235 Pfam Homeodomain 29 82 IPR001356 GO:0003677
Sebi94g00055 235 ProSiteProfiles 'Homeobox' domain profile. 24 84 IPR001356 GO:0003677
Sebi94g00055 235 SMART HOX_1 27 88 IPR001356 GO:0003677
Sebi94g00055 235 PRINTS Lambda-repressor HTH signature 55 64 IPR000047 GO:0003677
Sebi94g00055 235 PRINTS Lambda-repressor HTH signature 64 80 IPR000047 GO:0003677
Sebi94g00055 235 ProSitePatterns 'Homeobox' domain signature. 59 82 IPR017970 GO:0000981|GO:0006355
Sebi94g00055 235 SUPERFAMILY Homeodomain-like 21 86 IPR009057 -
Sebi94g00055 235 Gene3D - 21 90 - -
Sebi94g00055 235 Coils Coil 76 124 - -
Sebi94g00055 235 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 18 166 IPR045224 GO:0003700
Sebi94g00055 235 FunFam Homeobox-leucine zipper protein ATHB-13 21 88 - -
Sebi94g00055 235 CDD homeodomain 29 85 IPR001356 GO:0003677
Sebi94g00055 235 Pfam Homeobox associated leucine zipper 84 124 IPR003106 GO:0006355|GO:0043565
Sebi94g00055 235 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi94g00055 Sebi-Chr94 810185 811387 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi94g00055 7 235 Homeobox Transcription Factor Family AT1G69780 67.220 4.69e-104 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Sebi94g00055 Homeodomain 1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi94g00055 K09338 - gmx:100814080 410.223