Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi94g00040 ATGGCGATGGCATGGAATATGTGTGCTGTTGCCACCCCGAGTGATCCATACGCCATGCAAATGGTATTTGTGGATGAAGAAGGAGGGAAGATAGAGGCTATAGTGCAGAAGCAGTATATGAAGAAGTTTGCAGATTGCATGGTGGAGGGAGAGGTGTACAGGATTACAAACGTTGGTGTCTGTAAGAACGAAGGCAAATTTAGAGCGGCCGGGCATGACTACAAGTTGTCCTTTACATCCTGTACTAATGTTACTTTGTGCCAAGATTTCATAGGAGTTGTAACTGCTATCTCCGAGGAGCTGAATATAAACAGAGAAGGAAGGCAGACACGGCTAATGTTGATTGACTTTGTTGATGAATTTGGTAAGATTCGATGTGATGTTTTTGGAGATCTTATTAATGTCGTTATGGATTTCCTGGCTCTCCAACAGACTGGGTTGCATGTTGTTATAATTCAATTCGCTAAAGTTAATCTCTATAAAGGGGAGGTTGGGATTCAAAATGTGATGAATGCTTCAAAGATTTTGTGGAATCCAGAAATTCCAGAGGCAGTGGAGTTTAAGAATGGGCTAGTCGTCCATGAAATTGAAACTGAGGTAGCTATCTCAACCATTACTGATCGGCGACGTGCTCCATCCATGGGGGAGGAGTTCCTTAAACTACATCCAAAGAAATGGATTGGTCAACTCTACGATATGGTTGAGGAAGGTTACTTCATAATACTAGCTACTATTACTGAGATTGTTCAAGACTTTAAGTGGTGGTACATGACATGCTCCTTTATGAAAGCTGTGTCTTTCGTTGAAGGACTCCCTTGGTGTAAAGATTGTCAGAAAAATGTTTTTGATATGACCCCAAGGTACAAGGTTAAGCTATTTGTGTCAGATGGGAATGATAATGCCCATTTCATTCTGTGGGATTTGGACTGTTACTCATTGGTGAATCAAACCTGTCGACATATGCTAGCTGATATTGAGGGTCGGCCAGTTGGGTTCTTCCCAGAAGAAATACTTAACTTGGTGGGGAAAGAAATGTTGTTCCGAATTGAAAGCAGTGATGAAGATCTGTTAACATTTGATGATACTTTCAAGATAAAAAAGGTGTGTTTTGATGTGGATATAGTGGCTGAATATAAAGAAGCTGTTGATGATGAGACTCCCCTAAAGCTCAAGTTTGCTCCTGCCTTCACCAAGATAGCCGACTCTGATGCTAATGGGGATGGAATTCAATTGTCCACCTGCTGCAAATCTATTGCTTCTGAGCTTGAGATTACCCCTCCATCATGTGTTGGATCTTCTTCCAATGTCGAAGAAAATGGTGGTCGTGGAAAAAGGGACATGGAAGAACATGAAGAGCCTCCACTGGAGAGAAAGAAGAGGTGCAGGGTTAGACCAGTGAAGGTGGAGAAGAACTAA 1416 0.4195 MAMAWNMCAVATPSDPYAMQMVFVDEEGGKIEAIVQKQYMKKFADCMVEGEVYRITNVGVCKNEGKFRAAGHDYKLSFTSCTNVTLCQDFIGVVTAISEELNINREGRQTRLMLIDFVDEFGKIRCDVFGDLINVVMDFLALQQTGLHVVIIQFAKVNLYKGEVGIQNVMNASKILWNPEIPEAVEFKNGLVVHEIETEVAISTITDRRRAPSMGEEFLKLHPKKWIGQLYDMVEEGYFIILATITEIVQDFKWWYMTCSFMKAVSFVEGLPWCKDCQKNVFDMTPRYKVKLFVSDGNDNAHFILWDLDCYSLVNQTCRHMLADIEGRPVGFFPEEILNLVGKEMLFRIESSDEDLLTFDDTFKIKKVCFDVDIVAEYKEAVDDETPLKLKFAPAFTKIADSDANGDGIQLSTCCKSIASELEITPPSCVGSSSNVEENGGRGKRDMEEHEEPPLERKKRCRVRPVKVEKN 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi94g00040 471 SUPERFAMILY Nucleic acid-binding proteins 225 373 IPR012340 -
Sebi94g00040 471 SUPERFAMILY Nucleic acid-binding proteins 18 90 IPR012340 -
Sebi94g00040 471 Gene3D - 222 384 IPR012340 -
Sebi94g00040 471 MobiDBLite consensus disorder prediction 428 471 - -
Sebi94g00040 471 MobiDBLite consensus disorder prediction 439 459 - -
Sebi94g00040 471 CDD RPA1_DBD_A_like 7 84 - -
Sebi94g00040 471 Gene3D - 82 192 IPR012340 -
Sebi94g00040 471 Pfam Domain of unknown function DUF223 21 88 IPR003871 -
Sebi94g00040 471 SUPERFAMILY Nucleic acid-binding proteins 87 189 IPR012340 -
Sebi94g00040 471 CDD RPA1_DBD_B_like 89 188 - -
Sebi94g00040 471 Gene3D - 5 81 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi94g00040 Sebi-Chr94 561422 563769 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi94g00040 23 355 Core DNA Replication Machinery Family AT5G08020 21.851 1.20e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi94g00040 - - lja:Lj6g3v0884310.1 292.352