Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi94g00029 ATGAGTCGCAAGAGAGACAGACCCGACTTTTCCAGAAACGCTGCCAAGCGCCGCCGCCCCCTGCCAGAGCCCACAGAGGACGAGAGGCCCGCGCCGAGGCCTCCGCCGCCGTCCGCGGTGGTCGTCATGGGCCTCCCTATGGACTGCTCCGTGCTCGATCTCAAGTCCCGATTCGAGATCTACGGCTCCATCTCCCGCATCCGCATCGACCGCGACGCCGTCGGCTACATCACCTACCGAAACAAGGACTCAGCCGACGCCGCCATCGCCGCCGGCCTCGACACTTCCTTCGGAATCACAGTCAACTCCAAAAAGGTTCAGGTTTTGTGGGCTACCGATCCTCTTGCCATGTGGAGGGAAGGAGTTGGTAATAACAAGGATAAAGGGTCTATATCAAAGCTTGTGCGTGCTGAGGTGCCCTTGAGCAGGCATGGAAGAGGCAATAGACTCGCTTCAGCTATTGGGACTACCAAAAGTAATGAGGATAGCTCAGTTTTAGAAGTGCCTTTCAGGGGCAGAGAAATTGTTGCTTACGATGATATCCTGTAA 549 0.5647 MSRKRDRPDFSRNAAKRRRPLPEPTEDERPAPRPPPPSAVVVMGLPMDCSVLDLKSRFEIYGSISRIRIDRDAVGYITYRNKDSADAAIAAGLDTSFGITVNSKKVQVLWATDPLAMWREGVGNNKDKGSISKLVRAEVPLSRHGRGNRLASAIGTTKSNEDSSVLEVPFRGREIVAYDDIL 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi94g00029 182 PANTHER GEO13361P1-RELATED 37 140 - -
Sebi94g00029 182 CDD RRM_SF 44 102 - -
Sebi94g00029 182 SUPERFAMILY RNA-binding domain, RBD 23 120 IPR035979 GO:0003676
Sebi94g00029 182 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 38 113 IPR000504 GO:0003723
Sebi94g00029 182 SMART rrm1_1 39 109 IPR000504 GO:0003723
Sebi94g00029 182 MobiDBLite consensus disorder prediction 1 38 - -
Sebi94g00029 182 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 40 91 IPR000504 GO:0003723
Sebi94g00029 182 MobiDBLite consensus disorder prediction 1 30 - -
Sebi94g00029 182 Gene3D - 1 115 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi94g00029 Sebi-Chr94 400311 401198 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi94g00029 1 182 Homeobox Transcription Factor Family AT1G27050 49.756 4.63e-54 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi94g00029 - - ccaj:109806897 286.574