Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi947g00018 ATGACCACCCAACAACTTGCCCTGCTGGTGTTAATGATTGCAATATTAGTAACGGTGGGAGGAGCAGCAGCACTTGATGATAACAACGCCCTAACTGGTTGCATAGACACATGCGGAAACGTTTCAATTCCATATCCATTTGGCGTAGGCAAATCTTCTAAAACAGGTGAGAACTGTTTCTTGGAAGAAAGATTGAACCTTACCTGCGACAATAACTCTTTGTATCAAGGCAACACTCAAGTCCTAAACATAGACCTCCTCAAAGGCCAATATGAAATATCTTTTTTTGTTTCAAAGCTTTGCAATGATACAACAAGAGCCAATCAGCCCTTTCTTGAAACTCCTGCTTTTACCATCTCTAGCAAAGAAAACCAGTTCATAAGTGTTGGATGCAACACCTACGGCTATCTCAATAGCTATCACGACGGGGAAGAGTATTCGACGGGGTGTATAACGAGATGTAGCAGGTTACCTGATACGGTGAAAGATGGAGAGTGTTCGGGGATAGGGTGTTGTGAGGTGGATATTCCTTCTCAAATGAAGAATATCACTATACAGACATATAGCTTTAACTCTATGAATTTCAGTGGCTGTAGCTATTCCTTTGTTGCCAAACGAGGCTCATATAACTTTTCTGTTAGTCATTTGGACAAGCTGCCCTTTCATGAGATTCCTATGGTTGTTGATTGGACTGTTGGAAAGGAAAATGAAACATGTGGATTTTTCAAGGAAGGACACAAAAGTGCCTGCATGAATAATAGCTATTGTGACGATGATGACACGAGTTATGGATACCGGTGCAGATGTAAAACTGGTTTTGATGGAAATCCATATCATCCGAATGGTTGCCAAGACATTGACGAATGCAAGACAAAAAATCATACATGCATTAGTGATCTTCATTGTCGCAACATTGATGGGTCTTACGAATGTTTTTGTCCTCCTGGGCAAGTTGGAAATGGAAGAAATACAGGAGGAGGATGCCAACCAATCCGGCACGAAAGTATACTTACCAAGGTAGCCATTGGTGCATGTGCTGGACTTATAGCTCTATTGGGTGCTTCCTGGTTATACTTAATCTATCAAAAAAGGAAACTCACAAAACAAAGAAAAAAATTCTTTCAACAAAATGGTGGTTTCATTTTGCAACGAAGACTCTTTTCAAGAGAAGACTCCCACCAAATTGCTCAAATTTTCACAGCAGAAGAGCTGAAAAAGTCTACCAACAACTACAACGAGAGCTTAATCATTGGTAAAGGAGGTTTTGGAACAGTTTTTAAAGGATTTCTTGCTAATAATAGGATTGTTGCTGTGAAGAAGTCCAAAGTAGTGGATCAAAACCAAGCTGAGCAATTCATCAACGAAGTGATTATTCTATCCCAAATCAATCACAGGAAT 1398 0.3999 MTTQQLALLVLMIAILVTVGGAAALDDNNALTGCIDTCGNVSIPYPFGVGKSSKTGENCFLEERLNLTCDNNSLYQGNTQVLNIDLLKGQYEISFFVSKLCNDTTRANQPFLETPAFTISSKENQFISVGCNTYGYLNSYHDGEEYSTGCITRCSRLPDTVKDGECSGIGCCEVDIPSQMKNITIQTYSFNSMNFSGCSYSFVAKRGSYNFSVSHLDKLPFHEIPMVVDWTVGKENETCGFFKEGHKSACMNNSYCDDDDTSYGYRCRCKTGFDGNPYHPNGCQDIDECKTKNHTCISDLHCRNIDGSYECFCPPGQVGNGRNTGGGCQPIRHESILTKVAIGACAGLIALLGASWLYLIYQKRKLTKQRKKFFQQNGGFILQRRLFSREDSHQIAQIFTAEELKKSTNNYNESLIIGKGGFGTVFKGFLANNRIVAVKKSKVVDQNQAEQFINEVIILSQINHRN 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi947g00018 466 SMART egfca_6 285 329 IPR001881 GO:0005509
Sebi947g00018 466 Pfam Calcium-binding EGF domain 285 318 IPR001881 GO:0005509
Sebi947g00018 466 ProSitePatterns Protein kinases ATP-binding region signature. 417 440 IPR017441 GO:0005524
Sebi947g00018 466 ProSitePatterns Calcium-binding EGF-like domain signature. 285 311 IPR018097 GO:0005509
Sebi947g00018 466 ProSiteProfiles EGF-like domain profile. 285 323 IPR000742 -
Sebi947g00018 466 Gene3D Laminin 237 326 - -
Sebi947g00018 466 SMART egf_5 238 284 IPR000742 -
Sebi947g00018 466 SMART egf_5 288 329 IPR000742 -
Sebi947g00018 466 FunFam Fibrillin 2 280 324 - -
Sebi947g00018 466 Gene3D Phosphorylase Kinase; domain 1 385 466 - -
Sebi947g00018 466 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 302 313 IPR000152 -
Sebi947g00018 466 Pfam Wall-associated receptor kinase galacturonan-binding 34 88 IPR025287 GO:0030247
Sebi947g00018 466 SUPERFAMILY EGF/Laminin 279 321 - -
Sebi947g00018 466 CDD EGF_CA 285 319 - -
Sebi947g00018 466 SUPERFAMILY Protein kinase-like (PK-like) 393 466 IPR011009 -
Sebi947g00018 466 ProSiteProfiles Protein kinase domain profile. 411 466 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi947g00018 466 PANTHER OSJNBA0016N04.9 PROTEIN 8 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi947g00018 Sebi-Chr947 234357 242951 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi947g00018 1 466 Receptor kinase-like Gene Family AT1G21230 37.603 3.35e-82 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Sebi947g00018 GUB_WAK_bind 4.4e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi947g00018 - - gmx:100779983 510.76