Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi944g00007 ATGAGAAAGCCTTGTTGTGACAAAGAAAGTATGAACAAAGGTGCTTGGTCTAAGCAAGAAGATCAAAAGCTCATTGATTATATTCGAGTTCATGGTGAAGGATGTTGGCGCTCCATTCCCAAGGCTGCTGGGCTGCATCGTTGTGGCAAAAGTTGTAGGCTAAGATGGTTAAACTACTTACGACCAGACATCAAACGTGGAATCTTTGCTCAAGATGAAGAAGACCTCATCATTAAACTCCATGCCCTACTTGGCAATCGGTGGTCACTGATAGCTGGAAGGTTGCCAGGACGTACAGACAACGAGGTGAAGAACTATTGGAATTCTCACATCCGTAGAAAGCTAATAAAGATGGGAATTGATCCAAATAACCATAAGCTACACCAAACCTTATTTCCTCCTCCTATAGGTAGTGTGCATGCGGGTGAATCATCATCATCTAGGTCATTGAACAAAGAGCAAACTAGAGTCTCTAATTTCTTCAAATCCTGTCTTGAAGAAGAAGAAGAAACAACAATTAATTCATCATCTCCCTTAAATCTTGACCTAACCATTGCTTTACCTTCGCCTACTCTCCTTGAAAACAAGCCTATACCTAATTCTGATATTGATCTTAATTGTTAA 624 0.4038 MRKPCCDKESMNKGAWSKQEDQKLIDYIRVHGEGCWRSIPKAAGLHRCGKSCRLRWLNYLRPDIKRGIFAQDEEDLIIKLHALLGNRWSLIAGRLPGRTDNEVKNYWNSHIRRKLIKMGIDPNNHKLHQTLFPPPIGSVHAGESSSSRSLNKEQTRVSNFFKSCLEEEEETTINSSSPLNLDLTIALPSPTLLENKPIPNSDIDLNC 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi944g00007 207 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 166 - -
Sebi944g00007 207 CDD SANT 71 111 IPR001005 -
Sebi944g00007 207 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Sebi944g00007 207 Pfam Myb-like DNA-binding domain 69 110 IPR001005 -
Sebi944g00007 207 CDD SANT 15 60 IPR001005 -
Sebi944g00007 207 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 115 IPR017930 -
Sebi944g00007 207 SUPERFAMILY Homeodomain-like 11 107 IPR009057 -
Sebi944g00007 207 FunFam MYB-related transcription factor 12 65 - -
Sebi944g00007 207 Gene3D - 68 131 - -
Sebi944g00007 207 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Sebi944g00007 207 Gene3D - 13 65 - -
Sebi944g00007 207 SMART sant 65 113 IPR001005 -
Sebi944g00007 207 SMART sant 12 62 IPR001005 -
Sebi944g00007 207 FunFam Transcription repressor MYB4 68 133 - -
Sebi944g00007 207 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 64 IPR017930 -
Sebi944g00007 207 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi944g00007 Sebi-Chr944 59949 61612 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi944g00007 2 188 MYB Transcription Factor Family AT4G38620 54.634 2.97e-73 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sebi944g00007 Myb_DNA-binding 9.3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi944g00007 K09422 - gmx:100306391 309.686