Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi943g00015 ATGTTGAAGGCTTCTCAATTGATAGATGTGGTGATGTCCTCCACCAGGAGAGGAAGGTCTGCTTCACCAAATGACTCTGTATCTCCGGTTAGAGGCCGTCGATCAAGATCATTATCAAGGACTAGGAGGAGAAGTCGTTCCAGGAGTCCAGATTCTGTCGATGCAGCGAATCCTGGAAATAATTTGTATGTAACAGGCTTGTCCACGAGGATCACAACCAGCGAACTTGAGAAGTATTTCAACAAAGAGGGAAAGGTTGTTGAGTGCAACCTGGTAACAGATCCTCATACCAAAGAATCTCGTGGATTTGGTTTTGTCACTATGGAAACCAAAGATGATGCTGAGCGCTGTATCAAGTATTTGAACCGTTCTGTTTTTGAAGGTCGACTGATAACTGTGGAAAAGGCAAAGAGAAGTCGTGGCAGGACTCCAACTCCTGGCAGATACCATGGTTCAAGAGATAGGCGAGGACGTGGATGGAGACGTTCTCGCAGTTACTCACCTAGGCGTAGGCAGGACAGAGATTATTATTCAAGGGACAGGCGAGGAAGATCCCGTTCTCCATACAATAAGAGGGTGGACGATTACTCGGACTTGTATAGGAGGAGGAGGGATCGGTCCTTGTCAGCTGGGGATAGTCGCCATCCAAGATAA 654 0.4709 MLKASQLIDVVMSSTRRGRSASPNDSVSPVRGRRSRSLSRTRRRSRSRSPDSVDAANPGNNLYVTGLSTRITTSELEKYFNKEGKVVECNLVTDPHTKESRGFGFVTMETKDDAERCIKYLNRSVFEGRLITVEKAKRSRGRTPTPGRYHGSRDRRGRGWRRSRSYSPRRRQDRDYYSRDRRGRSRSPYNKRVDDYSDLYRRRRDRSLSAGDSRHPR 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi943g00015 217 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 45 205 - -
Sebi943g00015 217 MobiDBLite consensus disorder prediction 166 217 - -
Sebi943g00015 217 Gene3D - 10 144 IPR012677 -
Sebi943g00015 217 MobiDBLite consensus disorder prediction 13 34 - -
Sebi943g00015 217 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 62 131 IPR000504 GO:0003723
Sebi943g00015 217 MobiDBLite consensus disorder prediction 13 60 - -
Sebi943g00015 217 SUPERFAMILY RNA-binding domain, RBD 56 165 IPR035979 GO:0003676
Sebi943g00015 217 SMART rrm1_1 61 134 IPR000504 GO:0003723
Sebi943g00015 217 MobiDBLite consensus disorder prediction 136 217 - -
Sebi943g00015 217 MobiDBLite consensus disorder prediction 136 153 - -
Sebi943g00015 217 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 60 138 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi943g00015 Sebi-Chr943 218354 221167 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi943g00015 32 138 Eukaryotic Initiation Factors Gene Family AT2G23350 29.358 4.23e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi943g00015 K12897 - qsa:O6P43_021941 218.779