Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi942g00001 ATGAAGGAAGGTGAGAAGAGCCTGGATCCGCAACTATGGCATGCGTGTGCAGGTGGCATGGTTCAAATGCCTCAAGTGAACTCCAAAGTCTTCTACTTTCCACAAGGGCACGCAGAGCACGCTCACACCAACGTTGATCTGAGGGTTCCAGCACTCATCCTTTGCAGGGTTGCTGCAGTGAAATTCATGGCAGACCCAGAAACCGATGAAGTCTTCGCCAAGATAAGGCTCGTTCCTCTGAGGAATTCAGAGCTTGGTTTTGATGAAGAAGGTGGTGATGTGTTGGAAAGTTCAGAAAAGCCTGCATCTTTTGCCAAGACTTTAACTCAATCCGATGCTAACAATGGTGGGGGTTTCTCTGTTCCAAGGTACTGTGCTGAAACCATCTTTCCGCGGCTTGATTACTCAGCCGAACCGCCGGTTCAGACGGTGGTGGCTAAGGATGTTCACGGCGAGCTTTGGAAGTTCAGGCATATATATAGAGGCACGCCACGTAGGCACTTGCTTACAACCGGGTGGAGCACTTTTGTGAACCAGAAGAAACTGGTTGCAGGGGATTCTGTGGTGTTTCTGAGGGCTGAGAATGGGGAACTATGTGTTGGGATTCGTAGAGCAAAGAAGGGAATTGGTGGTGGTTCTGAGGCCTCATCTGGGTGGACCTCAGCTTCAGGCTCGGGTTCAGGGAACTGTGGTATTGGATCTTATGGGGCATTCTCTTTTTTCTTGAGAGAGGAGAACAAGCCATTGAGGAATGGTTGTGTTGGTAGTTTGAGTGGGAGAACAAAGGTGAGGCCTGAAGCTGTTATGGAAGCTGTGACACTGGCTGCTAGTAACCAGCCATTTGAAGTTGTTTATTACCCAAGAGCCAGCACTCCTGAGTTTTGCATTAAGGCTTCAGCTGTGAGGGCTGCTATGAAGGTTCAATGGTGCTCTGGGATGAGATTCAAGATGCCCTTTGAAACTGAGGACTCTTCCAGAATTAGCTGGTTCATGGGAACCATTGCTTCTGTTCAGGTTGTTGATCCTATTCGATGGCCCAATTCCCCCTGGAGGCTTCTTCAGGTTACATGGGATGAGCCAGATTTACTACAAAATGTGAAGCGTGTTAGCCCTTGGTTGGTTGAATTGGTATCAAACATACCAACCATGCATTTCACACCCTTCTCTCCACCAAGGAAGAAGCTGCGGTTTCCACAACACCCCGACTTCCCCCTTGACGTTCAAATTTCAACACCAACATTTTCAGGCAACCATCTTGGGCTCAATAGCCCCTTGTGTGGTTTATCTGATAATGCTCCTGCAGGCATACAGGGAGCCAGGCATGCTCAAATTGGAATATCTCTTTCAGATTTCCACCTTAACAACAAACTACAGTTGGGGTTACTTCCAACTAATATCCAGCAGCTTGATGTGCATGGTGGGATTTCAAATGGCAACATGACCAACCATGATAAGAGCAAAGAAAGCTTATCATGTTTGCTGACCATTGGAAAATCTAATAAGAGTTTGGAGAAATCTGATGATGTTAAGAAACACCACTTTTTGCTTTTTGGTCAACCAATACTCACTGAGCAACAAATTTCTAGAGATTTGTTGTCTCATAGTTGTACTGAAAAGAATTCACTACATGAGAACAAGGACAAAGTAAAATGCTTTCTTGATGACTCCCAATCTGCACTTTCACAGCAGTTTTCACCAGGTAAGGCCTCTACTGCTGAGTTTTCTTGGCAACTTGGGTTGGATGCTGGTCATTGCAAGGTTTTCTTGGAGTCAGAAGATGTAGGACGGACTCTAGACCTATCAAGTCTTGGTTCTTATGATGAGCTGTATAGGATACTGGCCAACATGTTTGGCATAGAAAGATCTGAGTTGTTGAACCATGTGTTCTACAGTGATGCAAAAGGTGCTCTAAAGGAAACTGGAGAAGAACCCTTCAGTGAATTTATGAAGACAGCAAAAAGATTGACAATTCTGACTGATTCAGGCAGCAAAAATAGTAGAAGGGCCTGGATTACACATGGATTGGATGCATCAAATAAAACAGGTCCTCTGAGCATATTTGCTTAA 2067 0.4543 MKEGEKSLDPQLWHACAGGMVQMPQVNSKVFYFPQGHAEHAHTNVDLRVPALILCRVAAVKFMADPETDEVFAKIRLVPLRNSELGFDEEGGDVLESSEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTVVAKDVHGELWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSVVFLRAENGELCVGIRRAKKGIGGGSEASSGWTSASGSGSGNCGIGSYGAFSFFLREENKPLRNGCVGSLSGRTKVRPEAVMEAVTLAASNQPFEVVYYPRASTPEFCIKASAVRAAMKVQWCSGMRFKMPFETEDSSRISWFMGTIASVQVVDPIRWPNSPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNIPTMHFTPFSPPRKKLRFPQHPDFPLDVQISTPTFSGNHLGLNSPLCGLSDNAPAGIQGARHAQIGISLSDFHLNNKLQLGLLPTNIQQLDVHGGISNGNMTNHDKSKESLSCLLTIGKSNKSLEKSDDVKKHHFLLFGQPILTEQQISRDLLSHSCTEKNSLHENKDKVKCFLDDSQSALSQQFSPGKASTAEFSWQLGLDAGHCKVFLESEDVGRTLDLSSLGSYDELYRILANMFGIERSELLNHVFYSDAKGALKETGEEPFSEFMKTAKRLTILTDSGSKNSRRAWITHGLDASNKTGPLSIFA 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi942g00001 688 Gene3D - 308 382 - -
Sebi942g00001 688 FunFam Auxin response factor 102 206 - -
Sebi942g00001 688 ProSiteProfiles PB1 domain profile. 582 662 IPR000270 GO:0005515
Sebi942g00001 688 Gene3D - 102 206 IPR015300 -
Sebi942g00001 688 Gene3D - 581 666 - -
Sebi942g00001 688 CDD B3_DNA 103 204 IPR003340 GO:0003677
Sebi942g00001 688 SUPERFAMILY DNA-binding pseudobarrel domain 97 205 IPR015300 -
Sebi942g00001 688 Pfam Auxin response factor 271 354 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Sebi942g00001 688 ProSiteProfiles B3 DNA-binding domain profile. 104 206 IPR003340 GO:0003677
Sebi942g00001 688 SMART B3_2 104 206 IPR003340 GO:0003677
Sebi942g00001 688 Pfam B3 DNA binding domain 104 205 IPR003340 GO:0003677
Sebi942g00001 688 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 6 661 IPR044835 GO:0003677|GO:0006355|GO:0009725
Sebi942g00001 688 FunFam Auxin response factor 309 382 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi942g00001 Sebi-Chr942 9586 12471 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi942g00001 1 665 B3 DNA Binding Superfamily AT4G30080 58.841 0.0 749
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Sebi942g00001 B3 5.5e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi942g00001 - - gmx:100814686 1132.86