Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi941g00002 ATGGCCATGCTCATGAGCATCATTGCCATTGTTTCCTTACTCACTCCAACCCACGCCAGAATACCCGGAGGGGCGTGTGGATATGGGAACCTATACAGCCAAGGGTACGGCGTGAACACTGCGGCACTGAGCACTGCTCTGTTCAACAATGGCTTCACCTGTGGGGCATGTTTCGAGATCAAGTGCACCGATGATCCTCAATGGTGCCATGCCGGTAACCCTTCCATCTTCATCACCGCCACCAACTTCTGCCCTCCAAACTACGCTCTTCCAAGCGACAATGGTGGATGGTGCAACCCTCCAAGGCCCCACTTCGACCTTGCCATGCCCATGTTCCTCAAAATCGCCCACTACCGCGCCGGAATCGTCCCTGTCTCTTATCGCCGCGTGCCGTGCCGGAAGCGTGGGGGGATGAGGTTCACGATCAACGGATTCCGTTACTTCAACTTGGTTTTGATCACAAACGTGGCGGGTGCAGGGGATATCATGAGGGCGAGCGTGAAAGGGTCAAGGAGTGGTTGGATGAGCATGAGCCGTAACTGGGGGCAGAACTGGCAGTCAAATGCGGTTTTGGTTGGTCAGTCACTGTCCTTCAGGGTGACAGGCAGTGACCGGCGCACCTCCACCTCGTGGAACATTGTCCCAGCTAATTGGCAATTTGGGCAAACTTTCATGGGGAAGAACTTCGGGGTCTAA 696 0.5517 MAMLMSIIAIVSLLTPTHARIPGGACGYGNLYSQGYGVNTAALSTALFNNGFTCGACFEIKCTDDPQWCHAGNPSIFITATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAHYRAGIVPVSYRRVPCRKRGGMRFTINGFRYFNLVLITNVAGAGDIMRASVKGSRSGWMSMSRNWGQNWQSNAVLVGQSLSFRVTGSDRRTSTSWNIVPANWQFGQTFMGKNFGV 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi941g00002 231 Pfam Expansin C-terminal domain 138 215 IPR007117 -
Sebi941g00002 231 Pfam Lytic transglycolase 40 127 IPR009009 -
Sebi941g00002 231 PRINTS Expansin signature 148 169 IPR002963 GO:0009664
Sebi941g00002 231 PRINTS Expansin signature 35 49 IPR002963 GO:0009664
Sebi941g00002 231 PRINTS Expansin signature 212 228 IPR002963 GO:0009664
Sebi941g00002 231 PRINTS Expansin signature 62 73 IPR002963 GO:0009664
Sebi941g00002 231 PRINTS Expansin signature 95 112 IPR002963 GO:0009664
Sebi941g00002 231 PRINTS Expansin signature 76 86 IPR002963 GO:0009664
Sebi941g00002 231 PRINTS Expansin signature 112 125 IPR002963 GO:0009664
Sebi941g00002 231 PRINTS Expansin signature 183 204 IPR002963 GO:0009664
Sebi941g00002 231 PRINTS Expansin signature 136 148 IPR002963 GO:0009664
Sebi941g00002 231 SUPERFAMILY Barwin-like endoglucanases 21 155 IPR036908 -
Sebi941g00002 231 Gene3D - 138 229 IPR036749 -
Sebi941g00002 231 Gene3D - 11 133 IPR036908 -
Sebi941g00002 231 CDD DPBB_EXPA_N 23 132 - -
Sebi941g00002 231 FunFam Expansin 137 229 - -
Sebi941g00002 231 PRINTS Expansin/Lol pI family signature 120 136 IPR007118 GO:0005576
Sebi941g00002 231 PRINTS Expansin/Lol pI family signature 174 188 IPR007118 GO:0005576
Sebi941g00002 231 PRINTS Expansin/Lol pI family signature 212 226 IPR007118 GO:0005576
Sebi941g00002 231 PRINTS Expansin/Lol pI family signature 44 62 IPR007118 GO:0005576
Sebi941g00002 231 PRINTS Expansin/Lol pI family signature 22 40 IPR007118 GO:0005576
Sebi941g00002 231 PANTHER EXPANSIN-A15 21 229 IPR002963 GO:0009664
Sebi941g00002 231 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 23 137 IPR007112 -
Sebi941g00002 231 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 147 226 IPR007117 -
Sebi941g00002 231 SUPERFAMILY PHL pollen allergen 134 225 IPR036749 -
Sebi941g00002 231 SMART dpbb_1 40 127 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi941g00002 Sebi-Chr941 32007 33347 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi941g00002 23 231 Expansin Gene Family AT2G39700 88.517 4.11e-142 396
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi941g00002 - - gmx:100812894 433.721