Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi940g00001 ATGGCTTCACTTGCAAAGCCGAATGATCCCTATGCCTTGGAAATGGTTTTCATTGACGATGAGGGTGGGAGAATTGAGGCGACAATGCCGAAAAACTTGATGATGAAATTTTCTCAGATAGTAGCTGAGAGGGAGGTTTATAGGCTCTCCAATTTTGCTCTGACAGAGAATTCGGGGAAGTTTCGGGCAGCCCATCACGAATTTAAGATCGTGTTTAATGGAGGGACCAAAATGATACGCTGTCCTTCAGTTAACATCCCGGTATCTGGGTTCTCATTGCTGAAAACCTCAGACATAAACAAGACTAATGGTTGTTCTGACTATCTCTTTGATTTTATGGGTGTCCTCACGGCTGTTTCCGAGGAGATAACGATGAAGAAGCAAGGCAGGGAGACAAGGCTGATTCTGCTTGATTTAGTTGACGAAATGGGCTCCATCAGATGTGCAGTATTCGGTGATATGGTGGATGTTGTTGCTGGCTTTCTGACCGTGCCAAGAGACGGGTTGCCCGTCCTAATCATCCAGTTAGCCAAAGCCAATATATATAAGGGCCAAGTTGGCATTCAGAATGTGATGAATGCAACAAAGTTTTACTGGAACCCTGACTTAGCAGAGGCCATTGAGTTTAAGAATGGGCTTGCTGTGCATGAAGTGGAGCCTGAACTAGCGATTGGTTTCATTAGCAACAGATCTAGACAGGTCTCAATGAAAGAAGAGTTCCTTACTATTTATCCAAGGAAGCCTATTGGAAAACTTAGCGTTAATAGCGAGGATGGTGCTTTCATTATTCTGGGGGTGATTGATGAAGTGTTGCAGGAAGAGAATTGGTGGTACATGGCTTGCACTTGCATGAAAGCTTTATCATTTGATTATGGCTTACCCTACTGTCGTGATTGCGAAAAAGTTTTGTTTGAAATGAACCCAAGGTTTAAGATAAAGATTCTGGTCACGGATGGTGAGGACTGGGTGCCGTTATTATTGTGGGACTCAGAATCCTATTCTTTAATGAACAAGAACTGCAGGGAATTGCTTTCTGAGATTAAGGGTGACCCAACTGAGTGCTACCCGTGTAATATATTGGATCTAATAGGCCAGGAGTTCCTCTTTCGAGTAGAGAGGAAGGAGGATGCAAAGTTTGTGAGTGAAGGAAGTTATGTTGTCAGAAGGGTGTGTGCTGATCAAAGTGTTATTGATGAGTTCAAAGGTGTAGTTGATGAAGAGACACCCTTGAAGAACAAGTTTGAACCTGCTTTCTCAAAATTGGGAGGCTGCGAACCAAGTGCATGTGTGCTGGAGTTGACACCACAAAGCAACTCTGTTCTTACTGATACTGATGTTAGCCACAATTCATCCACCCCATCCACAAATCATGCAGGGGCTTCTGTTGCTGTGATTAAAGTGCAAGGTGAACCAATAGCAGATGCTCCTGCTGAGGTGAAAAGGAGAACTAGGGTCAGAAGCATCAAGCTGGAAAGAACTTAG 1482 0.4379 MASLAKPNDPYALEMVFIDDEGGRIEATMPKNLMMKFSQIVAEREVYRLSNFALTENSGKFRAAHHEFKIVFNGGTKMIRCPSVNIPVSGFSLLKTSDINKTNGCSDYLFDFMGVLTAVSEEITMKKQGRETRLILLDLVDEMGSIRCAVFGDMVDVVAGFLTVPRDGLPVLIIQLAKANIYKGQVGIQNVMNATKFYWNPDLAEAIEFKNGLAVHEVEPELAIGFISNRSRQVSMKEEFLTIYPRKPIGKLSVNSEDGAFIILGVIDEVLQEENWWYMACTCMKALSFDYGLPYCRDCEKVLFEMNPRFKIKILVTDGEDWVPLLLWDSESYSLMNKNCRELLSEIKGDPTECYPCNILDLIGQEFLFRVERKEDAKFVSEGSYVVRRVCADQSVIDEFKGVVDEETPLKNKFEPAFSKLGGCEPSACVLELTPQSNSVLTDTDVSHNSSTPSTNHAGASVAVIKVQGEPIADAPAEVKRRTRVRSIKLERT 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi940g00001 493 CDD RPA1_DBD_A_like 8 78 - -
Sebi940g00001 493 Gene3D - 228 392 IPR012340 -
Sebi940g00001 493 Pfam Domain of unknown function DUF223 14 83 IPR003871 -
Sebi940g00001 493 SUPERFAMILY Nucleic acid-binding proteins 9 84 IPR012340 -
Sebi940g00001 493 Gene3D - 84 218 IPR012340 -
Sebi940g00001 493 SUPERFAMILY Nucleic acid-binding proteins 91 214 IPR012340 -
Sebi940g00001 493 SUPERFAMILY Nucleic acid-binding proteins 251 376 IPR012340 -
Sebi940g00001 493 CDD RPA1_DBD_B_like 111 210 - -
Sebi940g00001 493 Gene3D - 4 83 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi940g00001 Sebi-Chr940 9958 12383 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi940g00001 17 210 Core DNA Replication Machinery Family AT2G06510 27.363 6.83e-12 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi940g00001 - - lja:Lj6g3v0884310.1 331.643