Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi93g00120 ATGGAAGAGCAGATGCAAGAGGTTAAGAAGAAGGAGGATCCCAATGCCATTTCCAAATTCAGGATATCGGAGTCGTTGAGGGCAAAATTGAAGGAGAAGGGAATCGAGTCACTGTTTCCAATTCAGGCCATGACTTTCGATACCATTCTTGATGGCTCTGATTTGGTTGGTAGGGCTCGCACTGGTCAGGGTAAAACACTGGCCTTCGTGTTGCCCATATTAGAGTCTTTAACAAATGGTCCAACAAAAGCATCAAGAAAAACCGGCTATGGGAGGCCTCCCGGTGTTCTTGTGCTTTTACCCACTAGGGAATTGGCCTGTCAGGTGCATGCTGATTTTGAAGTTTATGGTGGGGCAATGGGATTGACTTCTTGTTGTTTATATGGTGGAGCTCCATATCAAAGTCAAGAAATTAAGCTCAAGAGAGGCGTTGATATTGTTGTTGGAACACCGGGCCGCATAAAGGATCATATAGAGAGGGAAAATATTGACCTGAGCCAACTAAAGTTTCGTGTGCTTGATGAAGCAGATGAGATGCTCAGGATGGGTTTTGTTGAAGATGTTGAACTGATTCTAGTGGAGACAATGACAATGTTCTCTATGCGTCCTAAGAGCATGCTCAATTTACATGTTTACCTTATAGTGCTGACTATGCTTTCTCAATATAGCACTGACTCCGTCCTTGGTAAGGTAGAAAATGTTGGTAAAGTTCAGACACTTCTGTTCAGTGCTACTTTGCCAGACTGGGTTAAGCATATTGCTGCAAAATTTCTGAAGCCAGATAAGAAAACTGCTGACCTGGTTGGAAATACGAAAATGAAGGCTAGCACCAGTGTCAGGCATATTGTTCTTCCGTGTACTAGTTCTGCCAGGTCCCAGCTTATCCCAGACATTATTCGCTGTTATAGCAGTGGAGGCCGGACAATTATATTTACTGAGACAAAGGAGTCTGCTTCTCAGCTTGCAGGGTTGTTGCCTGGAGCAAGAGCTCTCCATGGTGACATACAGCAGTCACAACGTGAGGTTACATTGTCTGGCTTCAGGTCTGGGAAATTCATGACATTAGTTGCCACAAATGTGGCAGCCCGAGGTCTGGATATTAATGATGTTCAATTAATTATCCAGTGTGAACCCCCACGGGATGTAGAAGCCTATATCCATCGTTCTGGACGCACAGGAAGGGCAGGTAATACTGGAGTCGCTGTTATGCTTTATGATCCAAGAAGATCAAGTGTATCTAAAATAGAAAGAGAATCGGGTGTAAAGTTTGAACATGTATCTGCCCCTCAGCCTGATGATATTGCCAAAGCTGTTGGTGGGGAAGCTGCTGAAATGATTACCCAAGTGTCTGATAGTGTGATTCCTGCGTTCAAGTCTGCTGCTGAGGAGCTTTTGAACAACTCTGGTTTAACAGTGGTTGAATTACTTGCAAAGGCTCTTGCCAAGGCTGTTGGTTATACCGAGATAAAGAAAAGATCACTACTCACTTCCATGGAGAACTATGTTACACTACTACTTGAAATTGGGAAACCTATCTTCACTCCATCTTTTGCGTATGGAATATTGAGGAGATTCTTGCCTGAAGAGAAGGTTGAGGCTGTGAAAGGTCTTACTCTCACTGCAGATGGAAGTGGTGTTGTTTTTGATGTACCAGCTGAAGACTTAGATACATATCTCACTGGTCAGGAAAATGCCTCTGATGTAAATTTAGAGGTGTTGAAAGCATTGCCACGTTTGCAGCAGAGAGATCAATCAAGAGGGGGCAGATTTGGTGATGGTGGTGGTCGAGGTGGATTCGGTGATAGAAGTGGGGGGAGCAGATTTTCAGGTGGCAGGGGCGGTGGCAGGAATGGTAGATTTTCAAATGATAGGTTTTCCAATGGTGGTGGGAGAGGTCGTGGCAACTGGGGTGGAAAGAGGTGGTGA 1926 0.4465 MEEQMQEVKKKEDPNAISKFRISESLRAKLKEKGIESLFPIQAMTFDTILDGSDLVGRARTGQGKTLAFVLPILESLTNGPTKASRKTGYGRPPGVLVLLPTRELACQVHADFEVYGGAMGLTSCCLYGGAPYQSQEIKLKRGVDIVVGTPGRIKDHIERENIDLSQLKFRVLDEADEMLRMGFVEDVELILVETMTMFSMRPKSMLNLHVYLIVLTMLSQYSTDSVLGKVENVGKVQTLLFSATLPDWVKHIAAKFLKPDKKTADLVGNTKMKASTSVRHIVLPCTSSARSQLIPDIIRCYSSGGRTIIFTETKESASQLAGLLPGARALHGDIQQSQREVTLSGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRRSSVSKIERESGVKFEHVSAPQPDDIAKAVGGEAAEMITQVSDSVIPAFKSAAEELLNNSGLTVVELLAKALAKAVGYTEIKKRSLLTSMENYVTLLLEIGKPIFTPSFAYGILRRFLPEEKVEAVKGLTLTADGSGVVFDVPAEDLDTYLTGQENASDVNLEVLKALPRLQQRDQSRGGRFGDGGGRGGFGDRSGGSRFSGGRGGGRNGRFSNDRFSNGGGRGRGNWGGKRW 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi93g00120 641 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 46 264 IPR014001 -
Sebi93g00120 641 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 2 461 - -
Sebi93g00120 641 MobiDBLite consensus disorder prediction 583 641 - -
Sebi93g00120 641 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 293 435 IPR001650 -
Sebi93g00120 641 SMART ultradead3 34 282 IPR014001 -
Sebi93g00120 641 CDD DEADc 26 259 - -
Sebi93g00120 641 Gene3D - 1 265 IPR027417 -
Sebi93g00120 641 CDD GUCT_RH7_like 492 577 - -
Sebi93g00120 641 Pfam GUCT (NUC152) domain 485 580 IPR012562 GO:0003723|GO:0004386|GO:0005524
Sebi93g00120 641 FunFam DEAD-box ATP-dependent RNA helicase 7 502 574 - -
Sebi93g00120 641 Gene3D - 279 502 IPR027417 -
Sebi93g00120 641 SMART helicmild6 319 396 IPR001650 -
Sebi93g00120 641 CDD SF2_C_DEAD 279 405 - -
Sebi93g00120 641 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 172 180 IPR000629 -
Sebi93g00120 641 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 94 408 IPR027417 -
Sebi93g00120 641 Gene3D - 503 574 - -
Sebi93g00120 641 Pfam Helicase conserved C-terminal domain 298 396 IPR001650 -
Sebi93g00120 641 SUPERFAMILY RNA-binding domain, RBD 489 572 IPR035979 GO:0003676
Sebi93g00120 641 Pfam DEAD/DEAH box helicase 39 252 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi93g00120 Sebi-Chr93 1774670 1778854 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi93g00120 34 402 Eukaryotic Initiation Factors Gene Family AT1G72730 28.418 2.10e-36 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi93g00120 K16911 - gmx:100820207 927.546