Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi93g00109 ATGCGTGCTTTTGTGTATAAATTCCATATGCAAGTAGTCAACAAAAGCCAACATGCCGGTCCACCTCCACTAGAAAGCCATAGCCAAACTTCACCTCACCCAAAGAACAAGGGAAGAAGAAGGGGTAGAGGTGGCAGAAAATCTGATCAAGGAGATGTTTTGATGAGGCCTAGTTGCAGGCCCTGCACTGTGACAAGTACTGTAAGTGGAAATGTTGAACATGGCTACATCTCTAGTGACATAGATATGGTTTTCCTACTTCAAGCAAGTTCCTTGAGCTTTGCTCGTAGGCCTGGGTATGGACAAGTTGGAACAAAATGTGTTGTGAAGGCTAACCACTTCTTTGCAGAGTTACCAGACAAGGACTTGAACCAATATGATGTTACTATTACCCAGAAGTGTCTTCCAGAACAAAAAAGTCTGTACACTGCAGGACAGCTTCCCTTTGCCTGGAGAGAGTTTAAGATTAAGCTTGTAGATGATGAGGATGGAGTTAAATGGCCCCAAAAGGGAAAGAGAGTACAAGGTGGTGATCAAGTTTGTTGCACGGGCAAACTTGCATCACTTAGGCCAGTTTCTAGCTGGGATTGGAGTCATGGTGTGGGATTTTACCAGAGTATAAGGCCTACTCAGATGGGCCTTTCCCTCAATATTGATATGGCATCTGCTGCATTCATTGAACCTCTTCCAGTAGTAGAATTTGTTGGCCAGCTATTGGGAAAAGATGTGCTGTCAAGGCAATTGTCGGATGCTGATCGCATTAAGATTAAGAAAGCCCTTAGAGGAGTTAAAGTTGAAGTAACACATAGAGGAAGTGTAAGAAGAAAATATCGTGTTTCAGGGTTGACTTCTCAACCACAAGAGAACTTGTGTAAGCTGTTTCCTGTTGATGAGAACTCAACTATGAAGTCAGTTGTGGAATACTTCCAAGAGATGTATGGTTTCACTATTCAACATACTCACCTTCCTTGCCTTCAAGTAGGAAACCAAAAGAAGGCTAACTATTTACCTATGGAGGCCTGCAAAATTGTTGAGGGACAACGGTATACAAAAAGGTTGAATGAGAAGCAAATTACTGCTCTATTGAAAGTTACTTGCCAGAGACCTCGTGACCGGGAAAATGACATTTTACGGACCATGCAACAGAATGCTTACGACCAAGATCCTTATGCAAAGGAATTTGGAATTAAAATCAGTGAAAAGCTTGCTTCTGTTGAAGCACGAATTCTTCCAGCCCCATGGCTTAAATATCACGAAAGCGGGAAAGAAAAGAATTGTTTACCCCAAGTTGGCCAGTGGAATATGATGAACAAGAAAATGATTAATGGAATGACTGTTAGCCGGTGGGCATGCATAAATTTTTCACGGAGCGTGCAAGATAGTGTTGCTCGTACTTTTTGTAATGAGCTTGCTCAAATGTGTCAAGTATCTGGAATGGAATTTAATCCAGAGCCTGTTATCCCCATCTACAATGCCAAGCCTGAGCAGGTGGAGAAAGCTTTGAAGCATGTTTACCATGTGTCATCGAACAAAACTAAAGGAAAGGAACTGGAGCTTTTGTTAGCAATATTGCCAGACAATAATGGGTCTCTCTATGGTGATCTCAAGCGTATTTGTGAAACTGACCTTGGTTTAATTTCACAATGCTGTCTGACAAAGCATGTCTTTAAAATCACTAAACAGTACCTGGCTAATGTGTCTCTGAAGATCAATGTTAAGATGGGAGGCAGAAACACTGTTCTTCTTGATGCTGTAAGCTGCAGAATACCATTGGTTAGTGACATACCAACCATAATTTTTGGAGCAGATGTTACCCACCCTGAAAATGGAGAAGATTCTAGTCCCTCAATAGCAGCTGTAGTAGCATCCCAAGACTGGCCTGAAGTAACAAAATATGCCGGTTTAGTGTGTGCTCAAGCTCATAGACAGGAACTTATACAAGATTTATACAAAACTTGGCATGACCCTGTTCGTGGCACAGTTAGTGGTGGCATGATACGGGATTTGCTGATTTCCTTTAGAAAAGCAACGGGACAAAAGCCATTGCGAATTATATTTTACAGGGATGGTGTAAGTGAAGGGCAATTTTACCAAGTTTTACTTTATGAGTTGGATGCAATCCGGAAGGCATGTGCTTCCTTAGAACCAAACTATCAGCCTCCGGTAACTTTCATAGTTGTACAAAAGAGACATCACACTAGGTTGTTTGCAAACAACCATAGGGACAGGAGCAGTACAGATAAGAGTGGGAATATACTGCCTGGGACCGTCGTTGATTCTAAAATCTGCCATCCAACAGAATTTGATTTTTACCTCTGCAGTCATGCTGGCATCCAGGGTACTAGTCGGCCAGCTCATTATCATGTTCTATGGGATGAAAACAACTTCACCGCAGATGGAATTCAGTCTTTGACAAACAATCTTTGTTATACATATGCCAGGTGTACGCGTTCTGTATCTGTTGTTCCTCCAGCATATTATGCACATTTAGCAGCCTTTCGAGCCCGTTTCTATATGGAACCAGATATGCAAGAGAATGGTTCTACAGGTGATGGTAATGCTAGTCATAGTTCCAAGGGAACAAGAGCATCTGGAGAGTGTGGTGTCAAGCCATTGCCAGCCTTGAAAGAAAATGTGAAGAGAGTAATGTTTTACTGTTAG 2661 0.4201 MRAFVYKFHMQVVNKSQHAGPPPLESHSQTSPHPKNKGRRRGRGGRKSDQGDVLMRPSCRPCTVTSTVSGNVEHGYISSDIDMVFLLQASSLSFARRPGYGQVGTKCVVKANHFFAELPDKDLNQYDVTITQKCLPEQKSLYTAGQLPFAWREFKIKLVDDEDGVKWPQKGKRVQGGDQVCCTGKLASLRPVSSWDWSHGVGFYQSIRPTQMGLSLNIDMASAAFIEPLPVVEFVGQLLGKDVLSRQLSDADRIKIKKALRGVKVEVTHRGSVRRKYRVSGLTSQPQENLCKLFPVDENSTMKSVVEYFQEMYGFTIQHTHLPCLQVGNQKKANYLPMEACKIVEGQRYTKRLNEKQITALLKVTCQRPRDRENDILRTMQQNAYDQDPYAKEFGIKISEKLASVEARILPAPWLKYHESGKEKNCLPQVGQWNMMNKKMINGMTVSRWACINFSRSVQDSVARTFCNELAQMCQVSGMEFNPEPVIPIYNAKPEQVEKALKHVYHVSSNKTKGKELELLLAILPDNNGSLYGDLKRICETDLGLISQCCLTKHVFKITKQYLANVSLKINVKMGGRNTVLLDAVSCRIPLVSDIPTIIFGADVTHPENGEDSSPSIAAVVASQDWPEVTKYAGLVCAQAHRQELIQDLYKTWHDPVRGTVSGGMIRDLLISFRKATGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPNYQPPVTFIVVQKRHHTRLFANNHRDRSSTDKSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADGIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAFRARFYMEPDMQENGSTGDGNASHSSKGTRASGECGVKPLPALKENVKRVMFYC 886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi93g00109 886 CDD PAZ_argonaute_like 228 344 - -
Sebi93g00109 886 Gene3D paz domain 222 349 - -
Sebi93g00109 886 FunFam protein argonaute 10-like 588 886 - -
Sebi93g00109 886 MobiDBLite consensus disorder prediction 16 56 - -
Sebi93g00109 886 MobiDBLite consensus disorder prediction 846 862 - -
Sebi93g00109 886 FunFam Argonaute 10 409 582 - -
Sebi93g00109 886 Pfam PAZ domain 252 361 IPR003100 GO:0005515
Sebi93g00109 886 Pfam Argonaute linker 1 domain 202 226 IPR014811 -
Sebi93g00109 886 SUPERFAMILY Ribonuclease H-like 511 841 IPR012337 -
Sebi93g00109 886 ProSiteProfiles Piwi domain profile. 519 840 IPR003165 GO:0003676
Sebi93g00109 886 SMART Piwi_a_2 519 840 IPR003165 GO:0003676
Sebi93g00109 886 SMART DUF1785_2 135 228 IPR014811 -
Sebi93g00109 886 FunFam Protein argonaute-2 222 350 - -
Sebi93g00109 886 ProSiteProfiles PAZ domain profile. 229 345 IPR003100 GO:0005515
Sebi93g00109 886 SMART PAZ_2_a_3 233 367 IPR003100 GO:0005515
Sebi93g00109 886 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 89 841 - -
Sebi93g00109 886 Gene3D - 588 886 IPR036397 GO:0003676
Sebi93g00109 886 MobiDBLite consensus disorder prediction 844 865 - -
Sebi93g00109 886 Pfam Piwi domain 520 839 IPR003165 GO:0003676
Sebi93g00109 886 SUPERFAMILY PAZ domain 223 385 IPR036085 GO:0005515
Sebi93g00109 886 CDD Piwi_ago-like 389 839 IPR045246 -
Sebi93g00109 886 Gene3D - 409 582 - -
Sebi93g00109 886 Pfam Mid domain of argonaute 428 505 IPR032473 -
Sebi93g00109 886 Pfam Argonaute linker 2 domain 371 417 IPR032472 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi93g00109 Sebi-Chr93 1564156 1571427 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi93g00109 48 886 Eukaryotic Initiation Factors Gene Family AT5G43810 75.787 0.0 1389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi93g00109 K11593 - gmx:100816999 1510.35