Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi93g00104 ATGGAGGAAGAGAGTCACTGCTTCGAGTGCCTCCAACTTCGAATCAACTCGGATTTCTCTGATCAACTCGTCTTCCATTATGCCATCTCCACTTCTGCTTTTCCTTTCGGATCCTCAGCTATCGTCCATATTTCTTGTACAGCAGGCGGTGAAGCTTTAGGCGGTCAATTTATATTACAGTACATTTCCAGTCATAAGAAGAGTTGTTTTACCAATTATGTAAATGAATATATTGTGGATAGTAGTGAAAGCACTAGGAGTAATGATCCTGATGTTGGAGGCAGTCAATATAATGATGTGGTTAATGGTGGAATGACTTCATCTGATGATTCTGAAACTAGAAAAGCTTCTTCAAGAAACAGAACATGTGATCATTCTGGAAGGTTTTCTTGTTCGAGGACAATCAGTTCACTGGCACCTATTGCTCGTGTCGAAATGTCCTCCTATTCTACATTTCAAGAGGTCGCCACTGATTTCTTGTCTGGGTTAACGGAAGATCATGTGTTAGATTCACTTGATCTCTTTATTGAAGGGAAAGCATCTGGACGGGACAGTATAAATTTCCTTAGTTTACTTGGGTTGCCATCATTTGAGGAAGATACTTTTCCAGGTTCTTTGAGGCATCCAAACATAGCTCCTGTGCTTGCAGTTTTAAAAACATCCGATCACATTAACATAGTGCTTCCAAAGACTCCATACAACTTGGAAAGTATTCTTCATTTTAACCCCAATGCCTTAAAGTCTGATTGGAATAGAAGATTTCTTATATATCAGCTACTCTCAGCCTTAGTGTACTTACATGGTTTAGGGGTTTGCCATGGTAATATATGCCCATCCAATATCATGTTGACTGATTCATTATGGTCTTGGCTGAGATTATGGAATGAACCTGTATTGGAATCTAATTTAACTTTGCAAAAGAATGAAAACATTAATTCTAAACCTGCAAAACTTGGTTGCTGTAATGGTGGCTGTCATTCTAATGGCCTTTATGCTGACCTAAAGCTTTCTCCATCAATAGATTGGCATTCTAGTTTTCATCAGTGGTGGAGAGGAGAGCTAAGCAATTTTGAGTATTTACTCATCTTAAACAGATTAGCAGGAAGAAGGTGGGGTGACCATACATTTCATCCGGTAATGCCTTGGGTAATTGATTTTAGCTCAAAGCCTGATGACAATTGTGATGCAGGGTGGCGAGACTTAACCAAAAGCAAATGGCGTTTGGCAAAAGGTGATGAACAGTTGGATTTCACCTATTCAACGTCTGAAATCCCTCATCATGTATCAGATGAATGTCTGTCAGAATTGGCTGTCTGCAGTTATAAAGCAAGAAGGCTGCCTTTAAGTGTTCTCCGAATGGCTGTTCGTTCAGTGTATGAACCTAATGAATATCCTTCCACAATGCAAAGGCTCTATCAATGGACCCCCGATGAATGCATTCCAGAGTTTTACTGTGATGCCCAAATTTTTAGGTCAATACATGATGGTATGGCTGATTTGGCTGTGCCTTCTTGGGCAGAGAGTCCCGAGGATTTCATTAAATTGCATCGTGACGCATTAGAAAGTAATAGGGTGTCATTTCAACTCCATCATTGGATAGATATAACCTTTGGGTACAAAATGTCTGGCCAGGCAGCTATTACTGCTAAGAATGTTATGCTTCCTCTATCAGAACCCACAATGCCAAGATCAGCAGGACGTCGTCAGCTCTTTACACGACCACACCCCATTCGTCATGCCACTACCAGCATAACACGTCATGGTTCCAATAAATATGCCAAAGTTTGGAGCCAAACAAATGAAATGCAGCGAGAGACATCTCTTCTATCTGAAACTGCTTATCTACAAGAACTAGAACAAGCATCTGCATTTTCCGAACATGCTAGGCATTTGAATGCCTGTTACCATTACCCACTAAATCAAATGAAAAGGAAACACATCTCATCTTTGGGAGACCCACCAACAGAAGGATTTAGTGAAAATATAAACAAACTATCTTTGATTGACAGAAACTATTGGTTGCCATATAAAATGAATTTAATCTCTTTTCTTCAACATATGGAAGAGGAAGATGAAGGCTCCTCAGGATATCCAGACTTGCTGCTTTGGAGGCAGAAATTATCTTCTTCAAGACTTGCCTCTGAAGATGTTGCTAGTGACATATTTTCTGTTGGCTGTCTCTTAGCAGAACTTCATCTTTGCAGGCCACTCTTTGATTCAATCTCATTGGCAATATACTTCGAGGATGGAACCTTACCAGGATCTCTGCAGGAACTACCTCCTCATGTTAGACTACTTGTTGAAGCATGCATCCAAAAGGATTGGACGAGGAGGCCATCAGCTAAAAGTCTTCTGGAATCACCTTATTTTCCAAAGACAGTCAAGTCCTCCTACTTGTTTCTTGCTCCACTTCAGCTTGTAGCTAAAGATGAAACTCGACTTCGTTATGCTGCAAATCTTGCAAAGCAGGGAGCTCTCAGGGAAATGGGTGCATTTGCAACTGAAATGTGTGCTGCTTATTGTTTAGCACTTATAGTGAATACTGTGAATGATACTGAATCTGAATGGGCATATATACTACTGAAGGAATTGATGAAATGCTTAGCAGAACAAGCAGTGAAAACATTAATATTGCCAACCATACAGAAAATTTTACAGACCACAGGTTATTTACATTTAAAGGTTTCCCTTTTACAAGATTCATTTGTACGTGAAATATGGAATCGAGTTGGTAAACAAACATACCTGGAAACTATTCACCCATTGGTCTTGTCGAACTTGTATATTTCTCCAGATAAAAGTTCAGCTGCCTCTGCTTCAGTTCTTCTAATCGGTTCTAGTGAGGAGATTGGTGTACCTATTACCATCCATCAGACTATCTTGCCTCTTGTTCACTGCTTTGGGAAAGGACTGTGTGCAGATGGCATTGATGTCCTGGTCAGAATTGGCGGTGTTTTTGGGGAATCCTTTATCGTCAAACAGATGCTACCATTACTGAAAAATGTCGTTCGCTCCTTCATTGATATGTCATGCATGAATAAGCCTGATCCTGTTCAGAGTTGGAGTGCTTTAGCACTTATTGATTGTATGATGACTTTAGATGGCCTTATAGCTTTCTTGACAGAAGAGGTCATCGTAAAGGAGCTACTTGAAGACCTAAGTTGCATACTCATTGGGGTTCTTATGCAGAAACATATGGAAATTGCAGTGCTTCAGGTTGCTGCTACTAATCTCTTTGGAATTTGTCAGCGGATTGGGGCAGATTTGACGGCATTGCATATTCTTCCTAAACTTAGAGAACTATTTGATGAGCTTGCTTTCTCCCAGGATATTTCCAAAGGTTCGACTACTGTTGGCAGAAACTTGAAGGTTACCAAATTAAAAGTTGGAGGGGACTTGCAAATTGAAAGTCGTATGGATCTAGTGTTGCTTCTCTATCCTTCCTTTGCATCTCTCCTTGGGATAGAGAAACTTCGTCAATGTTGTGCTACATGGTTGCTTCTCGAACAATTTCTTCTACGTTGTCATAATTGGAAGTGGGAATATGCAGGAGAATCATCAAAAAGTGGCTCAGAAAATATTTTTGCCAGAAGACCTACAATTGCCCAGGGATTCACATCTGAGCACAATCCAGCAAAACTGTTGCTTAATGGGGTTGGATGGTCAATTCCACAATCCCAAGGAAGTAGAAGTGCCAAAAATTTGATTCCTCAGAGACGGTCACTTAAAGTTCAGCAAAGCCCTGTAGTAATGAACGAAGGAATGTCATACCACATGAACCATGAACCCTGGTTTTGGTTCCCTAGTCCAGCCACCATCTGGGATGGGCCGGAATTTCTTGGGCGGGTGGGGGTTCAGAAAGATGACCTTCCATGGAAGATCAGAGCATCTGTAATCTACTCTATACGTGCACATCATGGAGCAGTGAGGTCTCTGGCTGTTGATCAGGATGAATGTATTGTTTTCACTGCAGGAATTGGCCAAGGATATAAAGGAACTGTTCAAAAGTGGGAATTGAGCCGAACTAACTGTCTGTCTGGCTATTATGGCCATGAGGAGGTGGTGAATGATATTTGCATCTTATCATCTAGTGGAAGAGTAGCATCTTGTGATGGAACGATTCACATTTGGAATAGTCAAACAGGGAAGCAAATATCAGTATTTGCGGAATCCCAAACAGAATCTGGCCATCCTGCAAGCCATCCACCCTCTGTGTTAAAAATTAACAGTGACCAAGCAAATGTCCTTAATTTGAATACACTATCAAATGGAATATTGTCTAGTGCTTTTGATTCAAGCCTTTATACTTGTATGCATCTATTAGACTCTGCTGAAACTCTTGTAGTTGGCACTGGAAATGGTTCTCTCAGGTTCATTGATATTGCTCGTGGTCAGAAGCTTCATATCTGGAGGGGGGAATCTAATGAATCTAGTTTTCCGTCACTTATTTCTGCCATTTGTTCCTCTGGTTCTGACAAGATGCAAGCAGGTGGAATTTCCACTTTGCCATCTTTAATTGCAACTGGACTAAGTTCTGGTCACTGTAAATTATTTGATGCAAAAAGTGGGAGTGTCATTTCCTCTTGGCGAGCTCATGATGGATATGTGACAAAGTTGGCAGCACCTGATGAGCATCTGCTCATTTCCAGCTCTCTGGACAGAACTTTACGAGTCTGGGACTTAAGAATGAATTTGCCATCCCAGCCCATTATTTTCAGAGGTCATTCAGATGGCATATCAAGTTTCTCCATTTGGGGCCAAGATGTTATTTCAATTTCCCGGAATAGGATTGGACTTCTTTCCTTGTCTAAATCTGCCAATGAAACCGATGGTCAGTATCACATTATCCCACAGAAACTCTACGTTTCTGATAATGGAATGAGAAGCTTGTCAGCATTATCAAGTATTAGTATACTTCCATTCTCTCGATTGTTTCTCATTGGAACAGAAGATGGCTATTTGAGAATTTGCTGTTAG 4977 0.4073 MEEESHCFECLQLRINSDFSDQLVFHYAISTSAFPFGSSAIVHISCTAGGEALGGQFILQYISSHKKSCFTNYVNEYIVDSSESTRSNDPDVGGSQYNDVVNGGMTSSDDSETRKASSRNRTCDHSGRFSCSRTISSLAPIARVEMSSYSTFQEVATDFLSGLTEDHVLDSLDLFIEGKASGRDSINFLSLLGLPSFEEDTFPGSLRHPNIAPVLAVLKTSDHINIVLPKTPYNLESILHFNPNALKSDWNRRFLIYQLLSALVYLHGLGVCHGNICPSNIMLTDSLWSWLRLWNEPVLESNLTLQKNENINSKPAKLGCCNGGCHSNGLYADLKLSPSIDWHSSFHQWWRGELSNFEYLLILNRLAGRRWGDHTFHPVMPWVIDFSSKPDDNCDAGWRDLTKSKWRLAKGDEQLDFTYSTSEIPHHVSDECLSELAVCSYKARRLPLSVLRMAVRSVYEPNEYPSTMQRLYQWTPDECIPEFYCDAQIFRSIHDGMADLAVPSWAESPEDFIKLHRDALESNRVSFQLHHWIDITFGYKMSGQAAITAKNVMLPLSEPTMPRSAGRRQLFTRPHPIRHATTSITRHGSNKYAKVWSQTNEMQRETSLLSETAYLQELEQASAFSEHARHLNACYHYPLNQMKRKHISSLGDPPTEGFSENINKLSLIDRNYWLPYKMNLISFLQHMEEEDEGSSGYPDLLLWRQKLSSSRLASEDVASDIFSVGCLLAELHLCRPLFDSISLAIYFEDGTLPGSLQELPPHVRLLVEACIQKDWTRRPSAKSLLESPYFPKTVKSSYLFLAPLQLVAKDETRLRYAANLAKQGALREMGAFATEMCAAYCLALIVNTVNDTESEWAYILLKELMKCLAEQAVKTLILPTIQKILQTTGYLHLKVSLLQDSFVREIWNRVGKQTYLETIHPLVLSNLYISPDKSSAASASVLLIGSSEEIGVPITIHQTILPLVHCFGKGLCADGIDVLVRIGGVFGESFIVKQMLPLLKNVVRSFIDMSCMNKPDPVQSWSALALIDCMMTLDGLIAFLTEEVIVKELLEDLSCILIGVLMQKHMEIAVLQVAATNLFGICQRIGADLTALHILPKLRELFDELAFSQDISKGSTTVGRNLKVTKLKVGGDLQIESRMDLVLLLYPSFASLLGIEKLRQCCATWLLLEQFLLRCHNWKWEYAGESSKSGSENIFARRPTIAQGFTSEHNPAKLLLNGVGWSIPQSQGSRSAKNLIPQRRSLKVQQSPVVMNEGMSYHMNHEPWFWFPSPATIWDGPEFLGRVGVQKDDLPWKIRASVIYSIRAHHGAVRSLAVDQDECIVFTAGIGQGYKGTVQKWELSRTNCLSGYYGHEEVVNDICILSSSGRVASCDGTIHIWNSQTGKQISVFAESQTESGHPASHPPSVLKINSDQANVLNLNTLSNGILSSAFDSSLYTCMHLLDSAETLVVGTGNGSLRFIDIARGQKLHIWRGESNESSFPSLISAICSSGSDKMQAGGISTLPSLIATGLSSGHCKLFDAKSGSVISSWRAHDGYVTKLAAPDEHLLISSSLDRTLRVWDLRMNLPSQPIIFRGHSDGISSFSIWGQDVISISRNRIGLLSLSKSANETDGQYHIIPQKLYVSDNGMRSLSALSSISILPFSRLFLIGTEDGYLRICC 1658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi93g00104 1658 ProSiteProfiles Trp-Asp (WD) repeats profile. 1529 1562 IPR001680 GO:0005515
Sebi93g00104 1658 ProSiteProfiles BEACH domain profile. 334 604 IPR000409 -
Sebi93g00104 1658 PANTHER GH12955P 4 1658 - -
Sebi93g00104 1658 ProSitePatterns Trp-Asp (WD) repeats signature. 1547 1561 IPR019775 -
Sebi93g00104 1658 MobiDBLite consensus disorder prediction 83 125 - -
Sebi93g00104 1658 SUPERFAMILY BEACH domain 337 578 IPR036372 -
Sebi93g00104 1658 Gene3D Transferase(Phosphotransferase) domain 1 199 321 - -
Sebi93g00104 1658 Pfam Protein kinase domain 204 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi93g00104 1658 SMART Beach_2 346 578 IPR000409 -
Sebi93g00104 1658 SUPERFAMILY Protein kinase-like (PK-like) 205 288 IPR011009 -
Sebi93g00104 1658 CDD Beach 348 578 IPR000409 -
Sebi93g00104 1658 SUPERFAMILY WD40 repeat-like 1298 1656 IPR036322 GO:0005515
Sebi93g00104 1658 SMART WD40_4 1341 1378 IPR001680 GO:0005515
Sebi93g00104 1658 SMART WD40_4 1623 1658 IPR001680 GO:0005515
Sebi93g00104 1658 SMART WD40_4 1463 1519 IPR001680 GO:0005515
Sebi93g00104 1658 SMART WD40_4 1423 1460 IPR001680 GO:0005515
Sebi93g00104 1658 SMART WD40_4 1522 1560 IPR001680 GO:0005515
Sebi93g00104 1658 SMART WD40_4 1295 1338 IPR001680 GO:0005515
Sebi93g00104 1658 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1529 1562 - -
Sebi93g00104 1658 Gene3D - 1500 1658 IPR015943 GO:0005515
Sebi93g00104 1658 Gene3D - 1292 1499 IPR015943 GO:0005515
Sebi93g00104 1658 Pfam Beige/BEACH domain 348 559 IPR000409 -
Sebi93g00104 1658 SMART serkin_6 135 790 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi93g00104 1658 Pfam WD domain, G-beta repeat 1525 1560 IPR001680 GO:0005515
Sebi93g00104 1658 Pfam WD domain, G-beta repeat 1343 1378 IPR001680 GO:0005515
Sebi93g00104 1658 Gene3D Transferase(Phosphotransferase) domain 1 698 798 - -
Sebi93g00104 1658 Gene3D BEACH domain 339 589 IPR036372 -
Sebi93g00104 1658 MobiDBLite consensus disorder prediction 83 111 - -
Sebi93g00104 1658 SUPERFAMILY Protein kinase-like (PK-like) 716 808 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi93g00104 Sebi-Chr93 1485356 1494910 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AurL-Cr-1 Sebi93g00104 Beach 9.5e-45 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi93g00104 K17601 - gmx:100809116 2948.3