Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi93g00099 ATGAATCGTCACCGTGGTGGAGTGAAGGAAGAGTTTCTGGGAGAAAGTTCGTCCTTTTATCAGCATCCATCAATGATGGTTTCTCCCCAACCAATTGAAGGACTTCATGAAGGTGGTCCTCCACCATTCCTCACTAAGACATATGACATAGTTGATGACCCTTCCACAAATCACATAGTTTCTTGGAGCAGTGCTAACAACAGCTTCGTTGTGTGGGATCCCCAAGCTTTCTCCATAACCCTTCTTCCCAGATTCTTCAAGCACAACAATTTCTCCAGTTTTGTCAGACAACTTAACACCTATGTTGATCCAGATAGGTGGGAGTTTGCTAATGAGATGTTTCTTAGAGGACAAAGAATTCTTCTAAAGAACATTAGAAGGAGGAAACCAAATCAATCTCAGGCAATGCTGCAGCAAGGTAATCTAGAGCCTTGTGTTGAGGTGGGTCGGTTTGGATTAGATGGAGGAGAAGTTGATCGGTTGAGGCGTGACAGACAAGTTCTGATGGTGGAGTTGGTCAAACTCAGACAACAGCAACAGAATACAAAAGCTCACCTTCAAGCAATGGAAGGAAGGCTTAAAAAGACTGAGCAGAAACAACAACAGATGATGAACTTCTTGGCAAAGGCAATGCAGAATCCCAACTTCCTTCAACAGTTAATGCACCAAAAGGAATGGAGAAAGGAGCTTGAGGAAGCCTTTTCCAATAAGAGAAGGAGGCCTATTGATCAAGGTCAAGGGCCTAGTAATAATGTTGAAGCTATTGGTGGTGGTGAATTAAGAGGATCATATGGTGCTGAAGATCAGTGCTCACCACCTTTTGTTAAAGTTGAACCACAGGAATACAGTGACAAATTATTAGAGTTTGAGATAACAGACCTGCAGCAAGATCTTGCCTTGAATAGTAATATTTCTGTTGAAGAGGGACAAAGTAGTGCTCAAAACATATTGGAGGAAGATATTCCTATTCAACTTGGAAGTAGAGATAAAAGCATTGATGAAGTGTTTTGGCAAGATTTGTTGAATGGGGGTATTGAAGATCAAGATGTACTAGATGTTGAAGATGTAGATATATTGGCTGAGCAACTTGGTTATTTGGCCTCTAGTCCTAAATAG 1116 0.414 MNRHRGGVKEEFLGESSSFYQHPSMMVSPQPIEGLHEGGPPPFLTKTYDIVDDPSTNHIVSWSSANNSFVVWDPQAFSITLLPRFFKHNNFSSFVRQLNTYVDPDRWEFANEMFLRGQRILLKNIRRRKPNQSQAMLQQGNLEPCVEVGRFGLDGGEVDRLRRDRQVLMVELVKLRQQQQNTKAHLQAMEGRLKKTEQKQQQMMNFLAKAMQNPNFLQQLMHQKEWRKELEEAFSNKRRRPIDQGQGPSNNVEAIGGGELRGSYGAEDQCSPPFVKVEPQEYSDKLLEFEITDLQQDLALNSNISVEEGQSSAQNILEEDIPIQLGSRDKSIDEVFWQDLLNGGIEDQDVLDVEDVDILAEQLGYLASSPK 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi93g00099 371 PRINTS Heat shock factor (HSF) domain signature 81 93 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sebi93g00099 371 PRINTS Heat shock factor (HSF) domain signature 43 66 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sebi93g00099 371 PRINTS Heat shock factor (HSF) domain signature 94 106 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sebi93g00099 371 Coils Coil 158 199 - -
Sebi93g00099 371 SUPERFAMILY "Winged helix" DNA-binding domain 39 128 IPR036390 -
Sebi93g00099 371 MobiDBLite consensus disorder prediction 238 258 - -
Sebi93g00099 371 Pfam HSF-type DNA-binding 43 128 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sebi93g00099 371 SMART hsfneu3 39 128 IPR000232 GO:0003700|GO:0006355|GO:0043565
Sebi93g00099 371 Gene3D - 36 129 IPR036388 -
Sebi93g00099 371 FunFam Heat shock transcription factor 1 36 129 - -
Sebi93g00099 371 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 29 279 IPR027725 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi93g00099 Sebi-Chr93 1424844 1426556 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi93g00099 23 369 HSF AT3G22830 55.080 1.51e-124 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Sebi93g00099 HSF_DNA-bind 4.9e-25 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi93g00099 K09419 - gmx:100809515 518.464