Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi93g00029 ATGGAGTTTCAGAGGCGCCAAGACCAGAGCCTCTCCGAGAGGAAGGGGCAGAAGCGGAAGCTAGATGAGGAATTACAGGAGGAGCGTCAGATCTCGGTGGCGCCGCCCACCGCCGACGAACGGGCGGCCCTGCTCGCCGACATCTCCGAACAGGTGAGCGTCCTCGAGTCTACTTTCACGTGGAACGAAGCCGATCGAGCAGCGGCCAAGCGCGCCACTCATGCGCTCGCCGATCTCGCCAAGAATGAGGAAGTGGTGAACGTGATTGTAGAAGGATGCGCAATTCCGGCTTTGGTTAAGCATCTTCAGGCGCCGCCTCTGAGTGACTGTGTTCAGAAGCCATTGCCATTTGAGCACGAGGTTGAGAAAGGGAGCGCTTTCGCGCTAGGACTTCTTGCCGTCAAGCCAGAACATCAGCAGCTCATTGTTGACAGTGGTGCCTTAACACATCTTGTTGATCTTTTAAAGAGGCATAAAAATGGCTTAACTTCTCGTGCTATTAATAGTCTCATTCGTAGGGCTGCAGATGCCATTACTAATCTTGCTCATGAGAATAGCAGCATTAAAACCCGTGTCAGGATGGAAGGTGGAATTCCACCACTTGTTCATTTGCTTGAATTTGCTGATACAAAGGTGCAAAGAGCAGCTGCTGGTGCACTGCGAACCCTAGCTTTTAAAAATGATGAAAACAAAAATCAGATTGTAGAATGCAATGCTCTTCCGACTCTGATTCTAATGCTGCGTTCTGAAGATGCTGCTATTCATTATGAAGCGGTTGGTGTGATTGGAAATCTAGTCCACTCTTCTCCTAATATAAAGAAAGAAGTTCTTCTTGCTGGGGCTTTACAACCTGTTATCGGATTACTTAGCTCCTGCTGCTCTGAAAGCCAGAGGGAAGCAGCATTGTTACTTGGACAGTTTGCAGCTACTGATTCAGACTGCAAGGTTCACATTGTACAGAGAGGTGCTGTCCGACCTTTGATAGAGATGCTTCAGTCTCCTGATGACACACATAACCAAGCTGGTATTGCACACAATGGTGGCTTAGTGCCATTGCTCAAACTTCTTGACTCAAAAAATGGGTCTTTGCAACATAATGCTGCTTTTGCTCTTTATGGCCTTGCAGATAATGAGGATAATGTGTCCGATTTCATTAGGGTAGGTGGAGTTCAGAAACTGCAGGAAGGAGAGTTTATTGTTCAAGCAACTAAAGATTGTGTTGCCAAGACATTGAAAAGATTAGAGGAGAAGATTCACGGCCGTGTGCTGAACCATTTGTTATATCTCATGCGAGTTTCAGAAAAGGGTTTTCAAAGACGAGTTGCTTTGGCTCTTGCGCATCTTTGTTCTGCAGATGATCAAAAAAGAATTTTTATTGATCACCATGGTCTTGAGTTGCTTATTGGGCTTCTTGGCTCATCTAGCTCTAAGCAGCAACTTGATGGTGCCGTGGCTTTATGCAAGTTGGCGAATAAAGCCTCGACTCTGTCTCCTGTGGATGCTGCTCCTCCTTCTCCAACACCCCAGGTCTATTTGGGAGAACAGTATGTAAACAATGCTACATTGTCTGATGTTACATTTTTGGTTGAAGGCAAACGATTTTATGCTCATAGAATTTGTCTACTTGCATCTTCAGATGCATTTCGGGCCATGTTTGATGGTGGTTATAGGGAGAAGGATGCAAGGGACATAGAGATCCCAAATATTAGATGGGAAGTTTTTGAGTTGATGATGAGATTTATATATACAGGATCAGTTGATGTCACTCTGGATATTGCTCAAGATCTTCTTCGAGCAGCTGATCAATATCTTTTAGAAGGACTTAAGAGACTCTGTGAGTACACAATTGCACAGGATATATCACTGGATAATGTGTCAAGTATGTATGAACTTTCAGAAGCCTTCAATGCAATATCATTGAGGCACGCATGCATCCTTTTTATCTTGGAGCAATTTGACAAGTTGAGTGCAAGGCCAGGGCTGAAAATGAGAGAAGTGAAAACAAGGGGGGTTGAGAAAAAGTTTCAGGTGACATCTGGGATGTGGATGGGTTGCTCAGATCATAGGTGA 2070 0.4512 MEFQRRQDQSLSERKGQKRKLDEELQEERQISVAPPTADERAALLADISEQVSVLESTFTWNEADRAAAKRATHALADLAKNEEVVNVIVEGCAIPALVKHLQAPPLSDCVQKPLPFEHEVEKGSAFALGLLAVKPEHQQLIVDSGALTHLVDLLKRHKNGLTSRAINSLIRRAADAITNLAHENSSIKTRVRMEGGIPPLVHLLEFADTKVQRAAAGALRTLAFKNDENKNQIVECNALPTLILMLRSEDAAIHYEAVGVIGNLVHSSPNIKKEVLLAGALQPVIGLLSSCCSESQREAALLLGQFAATDSDCKVHIVQRGAVRPLIEMLQSPDDTHNQAGIAHNGGLVPLLKLLDSKNGSLQHNAAFALYGLADNEDNVSDFIRVGGVQKLQEGEFIVQATKDCVAKTLKRLEEKIHGRVLNHLLYLMRVSEKGFQRRVALALAHLCSADDQKRIFIDHHGLELLIGLLGSSSSKQQLDGAVALCKLANKASTLSPVDAAPPSPTPQVYLGEQYVNNATLSDVTFLVEGKRFYAHRICLLASSDAFRAMFDGGYREKDARDIEIPNIRWEVFELMMRFIYTGSVDVTLDIAQDLLRAADQYLLEGLKRLCEYTIAQDISLDNVSSMYELSEAFNAISLRHACILFILEQFDKLSARPGLKMREVKTRGVEKKFQVTSGMWMGCSDHR 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi93g00029 689 ProSiteProfiles BTB domain profile. 523 590 IPR000210 GO:0005515
Sebi93g00029 689 Gene3D - 339 396 IPR011989 -
Sebi93g00029 689 SUPERFAMILY POZ domain 515 617 IPR011333 -
Sebi93g00029 689 SMART arm_5 135 183 IPR000225 GO:0005515
Sebi93g00029 689 SMART arm_5 269 309 IPR000225 GO:0005515
Sebi93g00029 689 SMART arm_5 185 225 IPR000225 GO:0005515
Sebi93g00029 689 SMART arm_5 227 267 IPR000225 GO:0005515
Sebi93g00029 689 SMART arm_5 82 134 IPR000225 GO:0005515
Sebi93g00029 689 SMART arm_5 336 376 IPR000225 GO:0005515
Sebi93g00029 689 SMART arm_5 451 491 IPR000225 GO:0005515
Sebi93g00029 689 Gene3D - 213 338 IPR011989 -
Sebi93g00029 689 Gene3D - 38 209 IPR011989 -
Sebi93g00029 689 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 347 389 IPR000225 GO:0005515
Sebi93g00029 689 Gene3D - 399 499 IPR011989 -
Sebi93g00029 689 MobiDBLite consensus disorder prediction 1 29 - -
Sebi93g00029 689 SUPERFAMILY ARM repeat 52 395 IPR016024 -
Sebi93g00029 689 FunFam Armadillo/beta-catenin repeat family protein 514 658 - -
Sebi93g00029 689 Pfam Armadillo/beta-catenin-like repeat 192 224 IPR000225 GO:0005515
Sebi93g00029 689 Pfam Armadillo/beta-catenin-like repeat 227 266 IPR000225 GO:0005515
Sebi93g00029 689 Gene3D Potassium Channel Kv1.1; Chain A 503 649 IPR011333 -
Sebi93g00029 689 SMART BTB_4 523 620 IPR000210 GO:0005515
Sebi93g00029 689 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 238 280 IPR000225 GO:0005515
Sebi93g00029 689 MobiDBLite consensus disorder prediction 1 31 - -
Sebi93g00029 689 Pfam BTB/POZ domain 516 618 IPR000210 GO:0005515
Sebi93g00029 689 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 196 231 IPR000225 GO:0005515
Sebi93g00029 689 CDD BTB_POZ_ARIA_plant 510 625 - -
Sebi93g00029 689 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 146 196 IPR000225 GO:0005515
Sebi93g00029 689 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 1 661 IPR044282 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi93g00029 Sebi-Chr93 347530 355699 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi93g00029 201 493 U-box Gene Family AT3G46510 25.497 3.70e-12 67.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Sebi93g00029 BTB 5.9e-26 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi93g00029 - - gmx:100784348 1174.84