Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi93g00027 ATGGTTCATCAAAAACAAATGCTGCACCTTCAGATTTCTGCTGCTGCTGCTACCTATGTGTTCCTTTGCTTCACTGCAACCGTTACAGTGATAACCACAATTCAAGCACAAACTGATCAGTCCTTCCTCACCTATGACTGTCCAAACACAACCACCTTTTCTCCCAACACTACCTACCAAACAAACCTCAATCACCTCCTTTCTTCGCTTGCATCAAATTCCACCCTCGAAAACGGCTTCTACAACACCACCGTCGGTGTCAACAGCAACACCGTGTACGGCGTCTTCCTCTGCCGTGGAGATCTCACTCCCGAAGCATGCAAGGACTGTGTTTCCATCGCGACCAAACAAGTGCTTCAAACGTGTCCTGTAGAGAAGGAATCGGTCATTTGGTTCGCCGAATGCATGATACGTTACTCCTACCAGTCCTTCTTCTCCATCGCTGCAGAAGTGCCTGTGTATGTTCTGATGAACACGGCAAGTGTATCGGAGCAGAGTCGCTTCATGGAACTGTTGAGTAACACCATGAACTCAGTGGCGGTTAAAGCAGCAAATGGTGGAGCTGACAAGAAATTTGCAACAGAAGAAGCAAATTTTTCTAGCTTCCAAACCTTGTACACGCTGGCACAGTGTACCCCTGATTTGTCACCGTTTGGCTGCCAAAAATGCCTCCAAATAGCAATTGGGCAACTAGCTATGGCTATAAAGCAAGGGGGAAGAGTGTTGATTCCAAGTTGTAATGTTAGGTATGAGTTATATCCCTTTTACCACAAAGTCACTGTGCCCACCCCATCAGAAGAACCGAGGCCAAACACACAAGAAAAATCACGGATCTCAGTAGGGATTATCATCTCAATTGTAGTTCCAGTTGTGCTTTTCTTGCTGGTTACCTTCTTTGGCTGCTGGATCATATCAGTAAGGGCAAGAACAAAGTACAGTTCAGTACCAGAAGAAAGTGTTCAAATCTCCAGGGTAGATGAATGCTTGCAATTTGATTTTGGTACAATCGTAGAGGCCACTAACAACTTCTGTGATGACAATAAATTAGGGGAAGGAGGATTTGGTGAGGTTTATAAGGGTAAACTATATAATGGGCAAGATATTGCTGTGAAGAGGTTATCAAGAAGCTCTAGGCAAGGCTTGGATGAATTTAAGAATGAGGTGGTTTTGGTAGCCAAACTACAACACAGAAATCTTGTCAGGCTTCTGGGATTTTGCTTGGATGGAGAAGAAAAAATGCTCATTTACGAATTCTTGCCTAACAAAAGCCTCGACCATTTTCTATTTGATCCTAAAAGAGGACAGCAGCTGAATTGGCCAAGTCGATACAAGATAATAGAAGGAATTGCTCGAGGGATGCTTTATCTTCATGAAGACTCTCGACTCAGAATCATACACCGTGATCTTAAAGCATCTAACATATTATTAGATGAGAATTTAAATCCAAAAATTTCAGATTTTGGGATGGCAAGAATTTTTGGTGCTGATCAAACTCGAGGGAACACAAACAGAGTTGTTGGAACATTAGGTTACATGTCTCCGGAATATGCAATGCATGGAGAGTTTTCTGTTAAAACAGATGTGTATAGCTTTGGTGTCCTTGTTCTAGAGATAATAAGTGGAAAGAAGATCACATCCTTCCATGAATCAGGTTATGCTGAGGACCTCTTGAACTATGCTTGGAAAAAATGGAGTGGTGGGATGCCATTGGAGTTACTGGATGTGAATTTGAGAGATTCATACTCAAGAGTTGAAGTCATAAGATGCATCCATGTTGGGTTATCTTGTGTTCAAGAAGATCCAGCTCAAAGGCCAACCATGCAGACAGTAGTTCTATTGCTAAGCAGTCATTCTGTTACTCTTGAACCACCTGAACGACCTGCTGGTTATATTCATAGTAAAACCGAACAGAGCTTCCCAAGAAAAGAGTTTGAGAACTCAGATAAGTCTACAAACCAATCAGTCTCAGCCTCTGTTGATGAAGCATCCATCACTCAGGTGTACCCTCGATAG 2013 0.4272 MVHQKQMLHLQISAAAATYVFLCFTATVTVITTIQAQTDQSFLTYDCPNTTTFSPNTTYQTNLNHLLSSLASNSTLENGFYNTTVGVNSNTVYGVFLCRGDLTPEACKDCVSIATKQVLQTCPVEKESVIWFAECMIRYSYQSFFSIAAEVPVYVLMNTASVSEQSRFMELLSNTMNSVAVKAANGGADKKFATEEANFSSFQTLYTLAQCTPDLSPFGCQKCLQIAIGQLAMAIKQGGRVLIPSCNVRYELYPFYHKVTVPTPSEEPRPNTQEKSRISVGIIISIVVPVVLFLLVTFFGCWIISVRARTKYSSVPEESVQISRVDECLQFDFGTIVEATNNFCDDNKLGEGGFGEVYKGKLYNGQDIAVKRLSRSSRQGLDEFKNEVVLVAKLQHRNLVRLLGFCLDGEEKMLIYEFLPNKSLDHFLFDPKRGQQLNWPSRYKIIEGIARGMLYLHEDSRLRIIHRDLKASNILLDENLNPKISDFGMARIFGADQTRGNTNRVVGTLGYMSPEYAMHGEFSVKTDVYSFGVLVLEIISGKKITSFHESGYAEDLLNYAWKKWSGGMPLELLDVNLRDSYSRVEVIRCIHVGLSCVQEDPAQRPTMQTVVLLLSSHSVTLEPPERPAGYIHSKTEQSFPRKEFENSDKSTNQSVSASVDEASITQVYPR 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi93g00027 670 ProSiteProfiles Protein kinase domain profile. 343 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi93g00027 670 Gene3D - 150 255 IPR038408 -
Sebi93g00027 670 Gene3D - 39 144 IPR038408 -
Sebi93g00027 670 FunFam cysteine-rich receptor-like protein kinase 10 419 621 - -
Sebi93g00027 670 ProSiteProfiles Gnk2-homologous domain profile. 41 144 IPR002902 -
Sebi93g00027 670 MobiDBLite consensus disorder prediction 624 670 - -
Sebi93g00027 670 Gene3D Transferase(Phosphotransferase) domain 1 419 623 - -
Sebi93g00027 670 SUPERFAMILY Protein kinase-like (PK-like) 327 630 IPR011009 -
Sebi93g00027 670 ProSiteProfiles Gnk2-homologous domain profile. 150 255 IPR002902 -
Sebi93g00027 670 CDD STKc_IRAK 349 611 - -
Sebi93g00027 670 MobiDBLite consensus disorder prediction 649 670 - -
Sebi93g00027 670 FunFam Cysteine-rich receptor-like protein kinase 25 152 255 - -
Sebi93g00027 670 ProSitePatterns Protein kinases ATP-binding region signature. 349 371 IPR017441 GO:0005524
Sebi93g00027 670 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 40 144 - -
Sebi93g00027 670 Pfam Protein tyrosine and serine/threonine kinase 347 611 IPR001245 GO:0004672|GO:0006468
Sebi93g00027 670 Gene3D Phosphorylase Kinase; domain 1 304 418 - -
Sebi93g00027 670 SMART serkin_6 343 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi93g00027 670 Pfam Salt stress response/antifungal 47 140 IPR002902 -
Sebi93g00027 670 Pfam Salt stress response/antifungal 162 253 IPR002902 -
Sebi93g00027 670 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 37 666 - -
Sebi93g00027 670 FunFam Cysteine-rich receptor-like protein kinase 10 306 418 - -
Sebi93g00027 670 ProSitePatterns Serine/Threonine protein kinases active-site signature. 464 476 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi93g00027 Sebi-Chr93 336073 339193 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi93g00027 23 670 Receptor kinase-like Gene Family AT4G05200 50.815 0.0 660
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Sebi93g00027 PK_Tyr_Ser-Thr 7.7e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi93g00027 - - qsu:112026294 740.725