Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi93g00021 ATGGCCACCGTGATAGATCAGGAAGAAGGTAACAAGCAGAAGGAGGACACCAAGACACTCATCTGTGCCCTCAACCTTCTCTCTCGTGACCTCCCTCTCCCTCCTCACCTCCTCACATCCGTTTCTTCCATCTATCATGACAACAGCCATTGGGCATGGCAGAAACCAGGTGTTGGAGAGCCTAGAACATATACTAGGCAAAGAACTAAAAAGAGAAAGGAAGCTTCTAGTTTTGCAGGTGCTGCATTTAAAACAAAGAAGGGTTTGGCTAGCTCATTTTCATCCAAAAAGGGAAAAGGGAAAGTGGTTGAAGTGGAAAATGATCAAGTCTTGAAAGAATTAGATGACATTGATTTTGAGGATTTAGAAGGTGATATGGGGAATTCTAGAGAAGATTTAGTAGCAGATCTTGAAGATGCACTATTGAAGCAGCGCCCAAATTGTGCGTCAGGTTTTAAATTGGAGGAAGCAAGGGAAAACCGTTATCAAAGTCAGATTCAGCATCGATTAAATGAGCTTGAAGAATTGCCCTCAAGCAGGGGAGAGGACCTGCAGACAAGGTGCCTGCTTGAACTTTATGGACTAAAGCTAGCTGAGTTGCAGTCAAAGGTTCGGTCTGAAGTGAGTTCTGAATACTGGCTCAATGTTAAATGTGCACATCCTGACAGGCAATTGTTTGATTGGGGTATGATGAGATTGCGGCGTCCACTTTATGGTGTTGGAGATCCATTTGCCATGGATGCTGATGATCAATTAAGGAAGAAACGGGATGCTGAGAGACTGTCAAGATTAGAAGAGGAGGAGAAAAATCATATTGAGACTAAAAAGAGAAAATTTTTTGCTGAAATACTCAATACTGTTCGCGAGTTCCAATTACAAATTCAAGCTTCTTTGAAGCGGAGAAAACAGAGGAATGATGGTGTCCAGGCATGGCATGGAAGGCAAAGACAACGGGCAACCCGAGCAGAGAAATTGAGATTTCAAGCCCTGAAGGCTGATGATCAAGAAGCTTACTTAAGAATGGTGAAAGAGAGTAAGAATGAAAGATTAACTTTGCTTCTTGAAGAAACAAACAAATTACTTGTAAATTTAGGAGCAGCTGTTCAACGTCAAAAGGACACCAAACATTCAGATGGTATGGAACCCTTGGAAGATTCTGAAGCTGATTTGCCCGAGTCAGATGCTTCAAAGAATGGAATTTCTAAGGAGTCACCTCTAGATGAAGACATAGATGTGATAGATTCTGATCATAATGGTGATTCTAGAGATTTACTTGAAGGTCAGAGGCAATACAACTCTGCCATACATTCAATTCAAGAAAAGGTCACTGAGCAACCGTCTATGCTTCAAGGTGGAGAATTAAGACCATACCAGATAGAGGGGCTCCAGTGGATGCTTTCTTTGTTTAATAACAACTTAAATGGAATTTTGGCTGATGAAATGGGGCTTGGGAAAACAATACAAACAATTTCACTGATAGCATATCTTATGGAACACAAGGGTGTGACTGGTCCCCACTTGATTGTTGCACCAAAGGCTGTTCTTCCAAATTGGGTACACGAGTTCTCAACATGGGTTCCCAGCATTACAGCTGTTCTTTATGATGGACGCCTGGAGGAGAGGAAAGCAATGAAGGAAGAATTGTCAGGAGAGGGGAAATTTAATGTTATGATAACACACTATGATCTTATAATGAGAGATAAGGCATTTCTCAAGAAAATTCAATGGCACTACTTGATTGTGGATGAAGGGCATCGGTTGAAGAATCATGAGTCTGTTCTAGCAAGAACCTTGGACTCTGGATATCACATCCAACGAAGACTTCTGTTGACTGGTACCCCAATTCAGAACAGTCTGCAGGAATTGTGGTCCCTGCTTAACTTTCTCCTTCCAAACATTTTCAACTCAGTTCAGAATTTCGAGGACTGGTTTAATGCTCCCTTTGCAGACCGAGTTGATGTCTCTCTAACAGATGAAGAACAGCTATTGATCATTCGGCGTCTGCATCAAGTAATAAGGCCCTTCATATTAAGAAGGAAAAAGGATGAGGTGGAAAAATTTCTTCCTGGAAAATCTCAGGTCATACTTAAATGTGATATGTCAGCCTGGCAGAAAGTATATTATCAACAAGTTACTGATGTAGGCAGAGTTGGCTTGGACAACGGTTCTGGAAAATCAAAAAGTCTGCAGAACTTAACAATGCAACTCAGAAAGTGTTGTAACCATCCCTACCTCTTTGTGGGAGAATATGATATGTATAAACGGGAGGAGATTGTTAGAGCATCAGGTAAGTTTGAACTTCTTGACCGTTTGCTCCCAAAACTTCGCAGAGCTGGTCACAGAGTCCTCCTTTTCTCACAAATGACTCGACTCATGGACATTCTCGAAATTTATTTGCGACTACATGATTTCAAGTATCTTAGACTTGATGGCTCAACAAAAACTGAGGAACGAGGCTCCCTACTACGAAAATTCAATGCTCCTGACTCCCCATACTTTATGTTTCTCTTGAGCACCCGTGCTGGAGGTCTTGGTTTGAACTTACAAACAGCAGATACTGTTATAATCTTTGACAGCGATTGGAACCCGCAAATGGATCAACAAGCTGAGGACCGAGCACATCGCATTGGACAAAAAAAGGAAGTTAGGGTTTTTGTGTTGGTTAGTGTGGGATCAATTGAAGAGGTGATTTTAGAGCGCGCAAAACAAAAGATGGGGATTGATGCCAAGGTCATTCAGGCAGGACTTTTCAACACAACCTCAACAGCTCAGGACAGAAGAGAAATGTTGGAGGAGATTATGCGAAGAGGTACAAGGTCACTTGGGAACGATGTGCCTAGTGAGAGAGAAATTAACCGCCTTGCTGCTCGATCAGATGAGGAATTTTGGCTGTTTGAGAAAATGGATGAAGAAAGAAGACAAAAGGAAAATTACAGATCTCGTCTCATGGAGGAGCATGAATTGCCAGATTGGGTGTATTCTCCTCTTAATAAGGATGATAAAGTTAAAGATTCCAACGGTAGTGTTACTGGAAAGCGGAAAAGAAAAGAAGTGGTATATGCAGATACATTAAGTGATCTACAATGGATGAAGGCTGTGGAGAATGGGGAAGACATGTCAAGGCTTTCAGTTAAGGGGAAAAGAAGAGACCGTCTCTCATCTGACAGCACTGCACAAGCTAGTGATAATGCGGGGGTAGAAGAAAGTTTATTAGACTTGAGGACCGAAAGTGTTTCCATGGCAAATGAGAGAACAAGTGAAGAAGATAGTTTCCATGTGACCCCTGCTTCAAAGAGATTCAAGCCTGAAGGGACAAATTTCCAGAAACATGCATACGAGGATGTCAGAGGAAGTGGTTTGAACCAACGTGTATTATCCTGGAATACTCACAAAAAGAAGAGATCAAGCTATCTTGGCCAGGGTTCATTATCCGATACTAGAGGGCAGACTTCAAATGGAAGAGCAAACTGGAACTGA 3477 0.4193 MATVIDQEEGNKQKEDTKTLICALNLLSRDLPLPPHLLTSVSSIYHDNSHWAWQKPGVGEPRTYTRQRTKKRKEASSFAGAAFKTKKGLASSFSSKKGKGKVVEVENDQVLKELDDIDFEDLEGDMGNSREDLVADLEDALLKQRPNCASGFKLEEARENRYQSQIQHRLNELEELPSSRGEDLQTRCLLELYGLKLAELQSKVRSEVSSEYWLNVKCAHPDRQLFDWGMMRLRRPLYGVGDPFAMDADDQLRKKRDAERLSRLEEEEKNHIETKKRKFFAEILNTVREFQLQIQASLKRRKQRNDGVQAWHGRQRQRATRAEKLRFQALKADDQEAYLRMVKESKNERLTLLLEETNKLLVNLGAAVQRQKDTKHSDGMEPLEDSEADLPESDASKNGISKESPLDEDIDVIDSDHNGDSRDLLEGQRQYNSAIHSIQEKVTEQPSMLQGGELRPYQIEGLQWMLSLFNNNLNGILADEMGLGKTIQTISLIAYLMEHKGVTGPHLIVAPKAVLPNWVHEFSTWVPSITAVLYDGRLEERKAMKEELSGEGKFNVMITHYDLIMRDKAFLKKIQWHYLIVDEGHRLKNHESVLARTLDSGYHIQRRLLLTGTPIQNSLQELWSLLNFLLPNIFNSVQNFEDWFNAPFADRVDVSLTDEEQLLIIRRLHQVIRPFILRRKKDEVEKFLPGKSQVILKCDMSAWQKVYYQQVTDVGRVGLDNGSGKSKSLQNLTMQLRKCCNHPYLFVGEYDMYKREEIVRASGKFELLDRLLPKLRRAGHRVLLFSQMTRLMDILEIYLRLHDFKYLRLDGSTKTEERGSLLRKFNAPDSPYFMFLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSIEEVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLEEIMRRGTRSLGNDVPSEREINRLAARSDEEFWLFEKMDEERRQKENYRSRLMEEHELPDWVYSPLNKDDKVKDSNGSVTGKRKRKEVVYADTLSDLQWMKAVENGEDMSRLSVKGKRRDRLSSDSTAQASDNAGVEESLLDLRTESVSMANERTSEEDSFHVTPASKRFKPEGTNFQKHAYEDVRGSGLNQRVLSWNTHKKKRSSYLGQGSLSDTRGQTSNGRANWN 1158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi93g00021 1158 Coils Coil 258 278 - -
Sebi93g00021 1158 SMART SnAC_2 970 1030 IPR029295 GO:0042393
Sebi93g00021 1158 Pfam Snf2-ATP coupling, chromatin remodelling complex 971 1030 IPR029295 GO:0042393
Sebi93g00021 1158 MobiDBLite consensus disorder prediction 1042 1102 - -
Sebi93g00021 1158 CDD SF2_C_SNF 754 888 - -
Sebi93g00021 1158 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 767 934 IPR001650 -
Sebi93g00021 1158 PANTHER SNF2/RAD54 HELICASE FAMILY 194 1055 - -
Sebi93g00021 1158 MobiDBLite consensus disorder prediction 1081 1096 - -
Sebi93g00021 1158 Pfam Helicase conserved C-terminal domain 764 877 IPR001650 -
Sebi93g00021 1158 MobiDBLite consensus disorder prediction 1130 1158 - -
Sebi93g00021 1158 FunFam Probable ATP-dependent DNA helicase CHR12 685 983 - -
Sebi93g00021 1158 Pfam SNF2-related domain 457 745 IPR000330 GO:0005524|GO:0140658
Sebi93g00021 1158 Gene3D - 424 678 IPR038718 -
Sebi93g00021 1158 SMART helicmild6 793 877 IPR001650 -
Sebi93g00021 1158 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 466 632 IPR014001 -
Sebi93g00021 1158 Coils Coil 968 988 - -
Sebi93g00021 1158 MobiDBLite consensus disorder prediction 401 424 - -
Sebi93g00021 1158 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 430 679 IPR027417 -
Sebi93g00021 1158 FunFam Chromatin structure-remodeling complex protein SYD 445 688 - -
Sebi93g00021 1158 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 681 931 IPR027417 -
Sebi93g00021 1158 Gene3D - 685 984 IPR027417 -
Sebi93g00021 1158 SMART ultradead3 450 643 IPR014001 -
Sebi93g00021 1158 MobiDBLite consensus disorder prediction 369 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi93g00021 Sebi-Chr93 286476 297851 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi93g00021 760 905 RAD5 or RAD16-like Gene Family AT5G43530 37.333 5.48e-21 98.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Sebi93g00021 SNF2_N 3.1e-69 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi93g00021 - - gmx:100786280 1882.07