Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi93g00001 ATGCATTGGTGCACCTTTTCACCACTGCAACTCCCAATTCTGTTATTATCCCTCACATTCCTCAACCACACAGCATATGCTACACACATATCTTACCCCCCACCACCTTACTATAACTGTTCAAGCAACAACACTAATTACGCACCCAATAGCATCTACCACACCAACCTTCAAACTCTTCTGTCACGCCTTTCCTCAAACGCCACGACCACTACCCAAATCTACAGCACCATCGTTGAGGAAGGCAACGACAACACTGTCTATGGCCTCTTCATGTGCAGAATTGGGGACGGGGAACCTGCAAAATGTAAAGAGTGCGTGATAAACTCAACGAAGGCGATAACGAAACTGTGTCCCCTGGCAAAAGAAGCCATACTTTGGGATAGTAACTGCTTCGTGCGTTACTCCAATCGTTATTTCTTCACCACAGTGGAAGAGAGTCCTAAACTAAGCTTCATGAATGAGCAGGACTATGAGGGACAGGTTGGTCACTTCAACAGCATACTATGGGATACCATGAATGAAGTGAGAAACAGAACAGCGAGTGCTCCTCTTGGATCCATGAAATATGGTTACAAGTCAGTGAACATCACAGCTAATCAAACGCTTTATGCAATGGAATATTGCATCCCATACCTTCCCTCAGATAATTGTAGTTGGTGTCTTAGTGATGCCATAGCAGAAATTCCAACTTCTTGTTGCAGAGGAAAAACTGGTGGCAGAGTTATTTACCCCAGTTGTGGTCTTAGATATGAACTATATCCATTTTACCATCCACTCGCTTCGAATTCGACACCACTGCCGCAATTACCTGCTACAGTTGATCCTCTTAACCCTTTGGCATCACCAGGGAAAGGAGAACATTCAAGATCAGCAATCGTTGTGGTGGTCCCAGTTGTTGTGTCGATGGTACTTTTAACCTTGGCTTGCGGCTGTTTTCTAAGCAGTAGAAGGAGGAAGAATCACGAGACGATTCTCAAAGAAAGCTGCGAAATTGAATCTTCAACAAACAAGTTTGCTAGAGAAAACATGATTGGGAAAGGTGGATTTGGAGAAGTTTATAAGGGTGTACTTCCCAATGGACAAGAGATAGCTGTGAAGAGGCTCTTGGGAAGCTCTGGGCAAGGCGCAATAGAATTTAAAAATGAGGTTCTTGTTATAGCTCAACTTCAACACAGGAATCTAGTGAAATTACAAGGATTTTGCCTGGATGGGCAAGAAAAGATACTCATATATGAATATGTACCTAACAAGAGTCTTGATTATTTTTTATTTG 1276 0.4295 MHWCTFSPLQLPILLLSLTFLNHTAYATHISYPPPPYYNCSSNNTNYAPNSIYHTNLQTLLSRLSSNATTTTQIYSTIVEEGNDNTVYGLFMCRIGDGEPAKCKECVINSTKAITKLCPLAKEAILWDSNCFVRYSNRYFFTTVEESPKLSFMNEQDYEGQVGHFNSILWDTMNEVRNRTASAPLGSMKYGYKSVNITANQTLYAMEYCIPYLPSDNCSWCLSDAIAEIPTSCCRGKTGGRVIYPSCGLRYELYPFYHPLASNSTPLPQLPATVDPLNPLASPGKGEHSRSAIVVVVPVVVSMVLLTLACGCFLSSRRRKNHETILKESCEIESSTNKFARENMIGKGGFGEVYKGVLPNGQEIAVKRLLGSSGQGAIEFKNEVLVIAQLQHRNLVKLQGFCLDGQEKILIYEYVPNKSLDYFLF 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi93g00001 425 ProSiteProfiles Gnk2-homologous domain profile. 146 256 IPR002902 -
Sebi93g00001 425 Gene3D - 36 140 IPR038408 -
Sebi93g00001 425 Gene3D - 149 256 IPR038408 -
Sebi93g00001 425 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 35 140 - -
Sebi93g00001 425 PANTHER CYSTEINE-RICH REPEAT SECRETORY PROTEIN 20 265 - -
Sebi93g00001 425 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 23 314 414 - -
Sebi93g00001 425 Gene3D Phosphorylase Kinase; domain 1 314 414 - -
Sebi93g00001 425 ProSiteProfiles Gnk2-homologous domain profile. 35 140 IPR002902 -
Sebi93g00001 425 ProSiteProfiles Protein kinase domain profile. 339 425 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi93g00001 425 Pfam Salt stress response/antifungal 161 254 IPR002902 -
Sebi93g00001 425 Pfam Salt stress response/antifungal 40 137 IPR002902 -
Sebi93g00001 425 ProSitePatterns Protein kinases ATP-binding region signature. 345 367 IPR017441 GO:0005524
Sebi93g00001 425 SUPERFAMILY Protein kinase-like (PK-like) 326 424 IPR011009 -
Sebi93g00001 425 Pfam Protein tyrosine and serine/threonine kinase 342 424 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi93g00001 Sebi-Chr93 1363 3240 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi93g00001 30 425 Receptor kinase-like Gene Family AT4G05200 42.206 4.34e-97 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Sebi93g00001 Stress-antifung 2.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi93g00001 - - tpra:123882552 493.812