Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi935g00014 ATGTCAGCGGCGTCGCCGTCTCCGGCGTCTTCCACCGCCGCGCCACCGCCACAATCACAAACACCTTCTTCTTCCAACAATAGTCCGCCACCGTCCTCCGTCGCCACTCCACCGCCGCGGCAACCCACTTCTCCTTCACCTAACAGTTCAGCTTCACCACCGCCAACAACCCCACCACCACCTCAGACCTCCCCACCGCCGGCCACCCCATTAGCTCCTCCCCCAGCCGTGACATCGCCTCCTCCGGCCTCACCTCCATTGCCGCCACCTGCGGCTCCCCCTCCAACGCCACCATCACGCCCACCTCCTCCGTCGCCACAAGCGCCGCCGCCATCTTCTCCGGCACTTCCACCACCCCCATCGCAATCACCGGTTCCGCCACAAAGCTCTCCACCGCCCCCGCCACCACGATCAGCTCCACCACCATCAAACCCACCTAACAACTCATCTCCTCCACCGGCAGCACCACCGCCGGAAAATTCACCCCCTCCTCCAGCCGCCGTGCCACCACCCCGGCGTTCTCCGCCACCCCGAGGTTCACCTCCACCACCACAGTCTGCCCCGCCCCCCAGTAACTCAACTCCTCCGGCATCACCGCCGGTGGCTGTGCCACCACCCAGGTCATCACCACCATCACCATCATCCTCACCACCACCACCACCACCAGCAGCATCCACTCCTCCTCCTGCAACACCAAGTCCTCAACTTGTTCCACCTTCAAATTCTACACCAGGGTCTCCCTCTCCTCCTTCACGCACGCTTCTTTCTCCGCCACCACCAACGCAGAACGGATCAGAAAACTCAAGCCCTGGAAGTGGTGGAATTAGTACTGGTGCTGTAGTGGCTATTAGTATATTCGGTGGTATTCTTCTGCTTGGGTTCATTGGAGTTGCTATCTGGTGCTTGAGGAGACAAAAGAGAAAGGAACCTGTTTCTGATGGTTATGTCATGCCACCCACTCTTCCCTCTTCAACTGGATCAGATTCATCCTTTTTTAAGACACATTCTTCTGCTCCTTTTATAAGAAGTGGCTCTGGCAGTGATGTTGTGTATACACCATCTGACCCTGGTGGATTAGGCAACTCAAGGTCATGGTTTACATATGAGGAACTAATCAAGGCCACAAATGGTTTCTCAAGTCAAAATCTTTTGGGTGAGGGTGGATTTGGTTCTGTTTATAAAGGATGTTTACCTGATGGGAGAGAGATAGCAGTCAAACAGCTGAAAGTTGGTGGAGGCCAAGGGGAGAGAGAATTCAAAGCTGAAGTGGAAATTATTAGTCGCATACATCATCGCCATTTGGTTTCTTTAGTGGGATACTGCATTGAAGATAACAGAAGACTCCTTGTCTATGACTATGTCCCTAACGATACTCTTTATTTTCATCTACATGGGAAAGGTCAGCCTGTGCTAGACTGGGCAAAGCGCGTTAAAATTGCAGCTGGTGCAGCTCGAGGAATAGCTTATCTCCATGAAGACTGTAATCCTCGGATTATTCATAGGGATATCAAGCCATCAAACATTCTTTTGGATCACAACTATGAAGCTCGAGTCTCAGATTTTGGGCTAGCCAAATTAGCTCTTGATGCATATACACATATATCTACACGTGTCATGGGAACTTTTGGGTATGTTGCCCCTGAATATGCATCAAGTGGCAAATTGACTGAGAAGTCTGATGTATTTGCTTTTGGAGTTGTGCTTTTGGAGCTCATTACCGGACGGAAGGCAGTAGATGCATCCCAACCCTTGGGAGATGAGAGTCTAGTTGAATGGGCTCGACCGCTGCTGAGTCAAGCACTTGAGAGTGAAGAATTTGAGAGTTTGGTAGATACAAGGCTAGAAAGAAACTACATTGATAGTGAAATGTTTTGCATGATTGAAGTTGCTGCTGCTTGTGTGCGGCATTCAGCTGCAAAGAGACCTCGCATGGGACAGGTTGTTAGAGCTTTTGATAGCTTAGCAGCTTCAGATCTAACTAACGGAATGCGACTTGGGGAAAGCCAGGCCTTTGACTCTGCACAGCAATCTGAAGAAATAAGACTGTTTCGGAGGATGGCATTTGGTAACCAAAATTATAGCTCAGATTTTTTTAGCCAAGGTAGTGTGAATGCATGA 2118 0.509 MSAASPSPASSTAAPPPQSQTPSSSNNSPPPSSVATPPPRQPTSPSPNSSASPPPTTPPPPQTSPPPATPLAPPPAVTSPPPASPPLPPPAAPPPTPPSRPPPPSPQAPPPSSPALPPPPSQSPVPPQSSPPPPPPRSAPPPSNPPNNSSPPPAAPPPENSPPPPAAVPPPRRSPPPRGSPPPPQSAPPPSNSTPPASPPVAVPPPRSSPPSPSSSPPPPPPAASTPPPATPSPQLVPPSNSTPGSPSPPSRTLLSPPPPTQNGSENSSPGSGGISTGAVVAISIFGGILLLGFIGVAIWCLRRQKRKEPVSDGYVMPPTLPSSTGSDSSFFKTHSSAPFIRSGSGSDVVYTPSDPGGLGNSRSWFTYEELIKATNGFSSQNLLGEGGFGSVYKGCLPDGREIAVKQLKVGGGQGEREFKAEVEIISRIHHRHLVSLVGYCIEDNRRLLVYDYVPNDTLYFHLHGKGQPVLDWAKRVKIAAGAARGIAYLHEDCNPRIIHRDIKPSNILLDHNYEARVSDFGLAKLALDAYTHISTRVMGTFGYVAPEYASSGKLTEKSDVFAFGVVLLELITGRKAVDASQPLGDESLVEWARPLLSQALESEEFESLVDTRLERNYIDSEMFCMIEVAAACVRHSAAKRPRMGQVVRAFDSLAASDLTNGMRLGESQAFDSAQQSEEIRLFRRMAFGNQNYSSDFFSQGSVNA 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi935g00014 705 CDD STKc_IRAK 384 654 - -
Sebi935g00014 705 Gene3D Transferase(Phosphotransferase) domain 1 454 671 - -
Sebi935g00014 705 ProSiteProfiles Protein kinase domain profile. 378 654 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi935g00014 705 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 291 686 IPR047117 -
Sebi935g00014 705 SMART serkin_6 378 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi935g00014 705 ProSitePatterns Serine/Threonine protein kinases active-site signature. 498 510 IPR008271 GO:0004672|GO:0006468
Sebi935g00014 705 FunFam Proline-rich receptor-like protein kinase PERK8 351 453 - -
Sebi935g00014 705 MobiDBLite consensus disorder prediction 258 272 - -
Sebi935g00014 705 ProSitePatterns Protein kinases ATP-binding region signature. 384 406 IPR017441 GO:0005524
Sebi935g00014 705 MobiDBLite consensus disorder prediction 1 272 - -
Sebi935g00014 705 Gene3D Phosphorylase Kinase; domain 1 358 453 - -
Sebi935g00014 705 Pfam Protein kinase domain 380 645 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi935g00014 705 MobiDBLite consensus disorder prediction 16 30 - -
Sebi935g00014 705 MobiDBLite consensus disorder prediction 31 257 - -
Sebi935g00014 705 FunFam proline-rich receptor-like protein kinase PERK8 454 665 - -
Sebi935g00014 705 SUPERFAMILY Protein kinase-like (PK-like) 360 649 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi935g00014 Sebi-Chr935 136669 141289 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi935g00014 120 647 Trihelix Transcription Factor Family AT1G68690 60.225 0.0 550
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Sebi935g00014 Pkinase 5.8e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi935g00014 - - gmx:100794393 766.918