Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi935g00010 ATGGATTACAATATGCCTCAAACACAACCACCATCAACAGGCTTCTATGGTGGTACTACTACCACTTCTTTTGATAAACTGAGTTTTGCAGATGTGGTGCAGTTTGCAGATTTTGGACCCAAACTAGCCTTAAACCAAAGCAATAACAAGAACTGTAGTGAAGAATCAGGGATTGACCCTGTGTATTTTCTCAAGTTTCCTGTGTTGAATGACAAGATGGAGGACCAAAATTTGATGGGTGATGGAGAAAATGATGAGAGGTTCAACTTGCAGCAACAGGAAAACAAGAAGAGGAAGAGACCAAGAACTGTTAAGACAAGTGAAGAAGTTGAGAGTCAGCGCATGACTCACATAGCAGTTGAAAGGAACAGAAGGAAGCAAATGAATGAGCATCTTCGTGTCCTCAGATCCCTCATGCCCGGTTCTTATGTCCAAAGGGGTGATCAAGCTTCTATAATTGGGGGAGCAATAGAGTTTGTGAGGGAATTGGAGCAACTTCTTCAGTGTTTGGAATCACAAAAGAGAAGGAGACTTCTTGGAGAAGCTCAATCAAGACAACAGGTTGGGGATTCATCAGCTCTTGCATCTGCACAACAGCAACAGCCTCCATTCTTTCCACCTTTGCCTTTGCCAAATGATGATGAGCAGATGAAGCTTGTTGAGTTAGAGAGTAGTGGACTTCGTGAAGAAACAGCAGAGAGCAAGTCTTGTTTGGCAGATGTAGAAGTGAAGCTTCTAGGATTTGATGCAATGATCAAAATCCTATCAAGGAGAAGGCCAGGACAGTTGATTAAGACCATTGCTGCCCTTGAAGATCTGCAGCTTATTATCCTTCACACCAACATCACCACCATTGAACAAACAGTTCTTTATTCATTCAATGTCAAGGTGGCTAGTGATTCAAGGTTCACTGCAGAAGATATAGCAAGCTCCGTTCAGCAGATACTGAGTTTTATACATGCAAACACTAGCATGTGA 978 0.4233 MDYNMPQTQPPSTGFYGGTTTTSFDKLSFADVVQFADFGPKLALNQSNNKNCSEESGIDPVYFLKFPVLNDKMEDQNLMGDGENDERFNLQQQENKKRKRPRTVKTSEEVESQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKRRRLLGEAQSRQQVGDSSALASAQQQQPPFFPPLPLPNDDEQMKLVELESSGLREETAESKSCLADVEVKLLGFDAMIKILSRRRPGQLIKTIAALEDLQLIILHTNITTIEQTVLYSFNVKVASDSRFTAEDIASSVQQILSFIHANTSM 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi935g00010 325 SMART finulus 118 169 IPR011598 GO:0046983
Sebi935g00010 325 Gene3D - 102 178 IPR036638 GO:0046983
Sebi935g00010 325 MobiDBLite consensus disorder prediction 89 114 - -
Sebi935g00010 325 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 112 163 IPR011598 GO:0046983
Sebi935g00010 325 CDD bHLH_AtFAMA_like 115 182 - -
Sebi935g00010 325 PANTHER TRANSCRIPTION FACTOR FAMA 36 316 IPR044283 GO:0003700|GO:0010052
Sebi935g00010 325 MobiDBLite consensus disorder prediction 189 210 - -
Sebi935g00010 325 FunFam Basic helix-loop-helix transcription factor 103 178 - -
Sebi935g00010 325 Pfam Helix-loop-helix DNA-binding domain 113 164 IPR011598 GO:0046983
Sebi935g00010 325 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 112 182 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi935g00010 Sebi-Chr935 109409 111031 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi935g00010 18 325 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G24140 62.778 2.12e-143 409
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sebi935g00010 HLH 6.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi935g00010 K26213 - gmx:100813515 446.432