LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sebi934g00011	ATGTATGAATTCTCAAAGGCATATTCTCTCCTTAATGCAGGAGAAGCTAAGGGTGTTCAACCAAGCGATTACGTTGTACCTGACGATGTTAAAGCAGCAGGTTTTCAAATCTGTGCTGATGAATTGGGGTCTATTGTTGAAGGCCACGATGTAAAGAAGCTCAAGTTTCATGGTGGAGTTAATGGTATTGCAGAAAAGCTTTCCACATCAACCACTAAGGGGCTTAGTGGTGATTCTGATGCCCGGCATAGGAGACAAGAGATTTTTGGAGTCAATAAATTTGCTGAAAGTGAAGTTCGGAGTTTCTGGGTTTTTGTTTATGAAGCCCTTCAAGACATGACTCTCATGATACTTGGTGTGTGTGCAGTTGTGTCTCTGATAGTTGGCGTAGCAACAGAAGGATGGCCCAAAGGGGCTCATGATGGTCTTGGAATTGTTGCAAGTATCCTATTGGTTGTCTTTGTAACAGCAACAAGTGATTATCGCCAATCATTACAATTCAAGGATTTAGACAAGGAGAAGAAAAAGATTTCCATTCAGGTAACAAGAAATGGTTATAGGCAGAAACTGTCAATCTACCATTTACTTCCTGGTGATCTTGTGCATCTTTCCATTGGAGACCAAGTCCCTGCAGATGGGTTATTTGTTTCTGGATTTTCTGTGTTGATTGATGAGTCAAGTTTAACTGGTGAGAGTGAGCCAGTGATGGTAACTTCCCAAAATCCATTTCTTCTCTCTGGAACCAAGGTCCAAGATGGATCATGCACAATGTTGGTTGCAACTGTTGGGATGAGAACTCAATGGG	805	0.4174	MYEFSKAYSLLNAGEAKGVQPSDYVVPDDVKAAGFQICADELGSIVEGHDVKKLKFHGGVNGIAEKLSTSTTKGLSGDSDARHRRQEIFGVNKFAESEVRSFWVFVYEALQDMTLMILGVCAVVSLIVGVATEGWPKGAHDGLGIVASILLVVFVTATSDYRQSLQFKDLDKEKKKISIQVTRNGYRQKLSIYHLLPGDLVHLSIGDQVPADGLFVSGFSVLIDESSLTGESEPVMVTSQNPFLLSGTKVQDGSCTMLVATVGMRTQW	268

Showing 1 to 1 of 1 entries

Annotation information

Show entries

Search:

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sebi934g00011	268	PANTHER	CATION TRANSPORTING ATPASE	34	268	-	-
	Sebi934g00011	268	Pfam	Cation transporter/ATPase, N-terminus	57	125	IPR004014	-
	Sebi934g00011	268	Gene3D	-	108	163	-	-
	Sebi934g00011	268	SMART	Cation_ATPase_N_a_2	55	130	IPR004014	-
	Sebi934g00011	268	Pfam	E1-E2 ATPase	177	267	-	-
	Sebi934g00011	268	SUPERFAMILY	Calcium ATPase, transduction domain A	179	267	IPR008250	-
	Sebi934g00011	268	SUPERFAMILY	Calcium ATPase, transmembrane domain M	57	179	IPR023298	-
	Sebi934g00011	268	FunFam	Calcium-transporting ATPase	156	268	-	-
	Sebi934g00011	268	Gene3D	-	79	267	-	-

Showing 1 to 9 of 9 entries

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sebi934g00011	Sebi-Chr934	201002	201928	Transposed

Showing 1 to 1 of 1 entries

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sebi934g00011	18	268	Primary Pumps ATPases	AT4G37640	82.072	8.33e-150	442

Showing 1 to 1 of 1 entries

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sebi934g00011	K01537		-	gmx:100776926	473.396

Showing 1 to 1 of 1 entries