Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi934g00010 GTTATGGCTCGATCCTCACCTTTAGACAAACATACATTGGTGAAACACCTCCGTACCACGTTTGGGGAAGTTGTAGCTGTAACTGGTGATGGAACAAATGATGCTCCAGCCCTTCATGAAGCAGACATTGGACTTGCAATGGGAATTGCTGGAACTGAGGTTGCTAAAGAAAGTGCAGATGTCATAATTCTGGATGATAATTTCTCCACAATAGTGACAGTGGCCAAATGGGGACGTTCAGTTTACATCAATATTCAGAAATTTGTACAGTTCCAGCTGACTGTAAATGTGGTTGCATTACTAGTAAACTTCTCATCAGCCTGCATGACAGGCAGTGCACCCCTCACAGCTGTTCAACTTTTGTGGGTGAACATGATAATGGACACGTTGGGAGCACTTGCACTTGCAACTGAACCTCCAACTGATGATTTAATGAAACGTGTACCAGTGGGGAGAAAGGGAGAATTCATCAACAATGTCATGTGGAGGAATATCTTAGGACAAGCATTGTACCAGTTTGTGGTGATATGGTTTCTTCAGTCAGTAGGAAAGTGGGTCTTTTTTCTCAGAGGCCCAAATGCTGATATAGTCTTAAACACACTTATCTTCAACTCATTTGTCTTCTGTCAGGTTTTCAATGAGGTAAACTCTCGTGAGATGGAGGAAATAGATGTTTTTAAGGGCATATGGGATAATCATGTGTTTGTGGCTGTCCTCGGTTGCACTGTGGTCTTTCAAATCATAATAGTTGAGTACTTGGGAACCTTTGCAAACACAACACCTCTCAGTCTGGTACAGTGGATCTTTTGCTTGTCGGTTGGATATGTGGGCATGCCAATCGCAACTTACTTAAAGCAGATCCCTGTCTGA 870 0.4276 VMARSSPLDKHTLVKHLRTTFGEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKESADVIILDDNFSTIVTVAKWGRSVYINIQKFVQFQLTVNVVALLVNFSSACMTGSAPLTAVQLLWVNMIMDTLGALALATEPPTDDLMKRVPVGRKGEFINNVMWRNILGQALYQFVVIWFLQSVGKWVFFLRGPNADIVLNTLIFNSFVFCQVFNEVNSREMEEIDVFKGIWDNHVFVAVLGCTVVFQIIIVEYLGTFANTTPLSLVQWIFCLSVGYVGMPIATYLKQIPV 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi934g00010 289 SUPERFAMILY HAD-like 1 76 IPR036412 -
Sebi934g00010 289 SUPERFAMILY Calcium ATPase, transmembrane domain M 78 288 IPR023298 -
Sebi934g00010 289 Gene3D - 40 288 - -
Sebi934g00010 289 PRINTS P-type cation-transporting ATPase superfamily signature 28 47 - -
Sebi934g00010 289 PRINTS P-type cation-transporting ATPase superfamily signature 52 64 - -
Sebi934g00010 289 PRINTS H+-transporting ATPase (proton pump) signature 60 85 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Sebi934g00010 289 PRINTS H+-transporting ATPase (proton pump) signature 28 44 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Sebi934g00010 289 Pfam haloacid dehalogenase-like hydrolase 13 68 - -
Sebi934g00010 289 Pfam Cation transporting ATPase, C-terminus 113 285 IPR006068 -
Sebi934g00010 289 PANTHER CATION TRANSPORTING ATPASE 1 288 - -
Sebi934g00010 289 FunFam Calcium-transporting ATPase 45 289 - -
Sebi934g00010 289 NCBIfam HAD-IC family P-type ATPase 2 112 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi934g00010 Sebi-Chr934 198085 199699 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi934g00010 1 289 Primary Pumps ATPases AT4G37640 82.699 5.98e-172 500
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi934g00010 K01537 - gmx:100815662 552.362