Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi934g00001 ATGGCGCAGAAGATTGGAAAATCAACGCGCCGCCCTGGCGCTTCCTCCAAGGCGAGGGTTTATGTCGACGTCAACGTTGTTCGCCCCAAGGAATATTGGGACTACGAGTCCCTCACCGTCCAGTGGGGGGAACAAGATGATTATGAGGTGGTGAGGAAGGTGGGTAGGGGGAAATACAGTGAGGTGTTTGAAGGTGTTCACTGCACTGATAATGAAAAATGTATCATCAAAATCCTGAAACCCGTAAAGAAGAAGAAGATCAAGAGGGAAATCAAAATATTACAGAATCTTTGTGGAGGGCCCAATATTGTAAAGTTGCTTGACATTGTTAGAGACCAGCAGTCGAAGACCCCCAGTCTTATATTTGAATATGTCAATAACACTGATTTTAAAGTGCTTTATCCTACATTGTCAGATTATGACATACGATATTATATCTATGAACTTCTAAAGGCACTGGATTATTGCCATTCACAAGGAATCATGCATCGGGATGTAAAGCCCCATAATGTAATGATTGACCATGAGCAGCGTAAGCTTCGTCTTATAGATTGGGGGCTTGCAGAGTTCTATCATCCTGGGAAAGAATATAATGTCCGTGTGGCTTCAAGATATTTCAAAGGTCCTGAGCTTCTTGTTGATCTTCAAGACTATGATTACTCGCTAGATTTATGGAGTCTTGGTTGTATGTTTGCTGGGATGATTTTCCGTAAGGAGCCATTCTTTTATGGACATGATAACTATGATCAACTGGTCAAGATAGCTAAGGTACTTGGGACAGATGAGTTAAGTGCATATTTGAGTAAGTATCGAATAGAGTTGGACCCACATCTTGCGGCACTTGTTGGAAGGCATAACCGGAAGCCATGGGTAAAGTTCATTAATGTAGAAAATCAGCACTTGGCTGTTCCTGAGGCTGTTGACTTTGTTGACAAGTTACTACGATATGATCACCAAGAACGTCCCACTGCAAAAGAAGCCATGGCTTCTGATGTGATTTGGCTTTAG 1008 0.4236 MAQKIGKSTRRPGASSKARVYVDVNVVRPKEYWDYESLTVQWGEQDDYEVVRKVGRGKYSEVFEGVHCTDNEKCIIKILKPVKKKKIKREIKILQNLCGGPNIVKLLDIVRDQQSKTPSLIFEYVNNTDFKVLYPTLSDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHEQRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDLWSLGCMFAGMIFRKEPFFYGHDNYDQLVKIAKVLGTDELSAYLSKYRIELDPHLAALVGRHNRKPWVKFINVENQHLAVPEAVDFVDKLLRYDHQERPTAKEAMASDVIWL 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi934g00001 335 Gene3D Phosphorylase Kinase; domain 1 101 124 - -
Sebi934g00001 335 Gene3D Phosphorylase Kinase; domain 1 39 97 - -
Sebi934g00001 335 ProSitePatterns Protein kinases ATP-binding region signature. 54 77 IPR017441 GO:0005524
Sebi934g00001 335 FunFam Casein kinase II subunit alpha 34 124 - -
Sebi934g00001 335 ProSiteProfiles Protein kinase domain profile. 48 335 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi934g00001 335 ProSitePatterns Serine/Threonine protein kinases active-site signature. 161 173 IPR008271 GO:0004672|GO:0006468
Sebi934g00001 335 SMART serkin_6 48 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi934g00001 335 CDD STKc_CK2_alpha 29 329 IPR045216 GO:0004674|GO:0006468
Sebi934g00001 335 PANTHER CASEIN KINASE II SUBUNIT ALPHA 13 330 IPR045216 GO:0004674|GO:0006468
Sebi934g00001 335 SUPERFAMILY Protein kinase-like (PK-like) 19 329 IPR011009 -
Sebi934g00001 335 Gene3D Transferase(Phosphotransferase) domain 1 125 330 - -
Sebi934g00001 335 FunFam Casein kinase II subunit alpha 125 333 - -
Sebi934g00001 335 Pfam Protein kinase domain 48 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi934g00001 Sebi-Chr934 16637 25515 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi934g00001 46 328 Core Cell Cycle Gene Families AT1G76540 30.195 1.57e-38 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CK2 Sebi934g00001 Pkinase 2e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi934g00001 K03097 - egr:104418449 635.95