Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi92g00034 ATGGATTTTCTAAGCAAAAAACACTTGCTCAATGTGTCACACACTTCATGTGAGTCAGAACATGGTTTTTCCCCTATCACAACTAATCCTCCTTTGGTTGGACATTATTCTGGTTCAAGTTTTCCCATCATAGCAACCATTGTAATAGGAATGTTTGCCACATCTTTCTTGCTCATGGGCTACTACATCTTTGTGATCAAGTGCTGCCTCAATTGGAACAGTGTTGATCTTGTAAGAATAAGGCGTTTTTCTCTATCTAGGCGATTTGAAGAGCCATCTGCAGCACAATCATCACATGCATCTGAGCATAGAGGACTAGAGGAAGCAGTGATTCGGTTAATTCCAGTGATTCATTACAAGACAGAAGAAGGAGACACAGAGAGTGGTGAAAGAAGCTTTTGTGAATGTGCTGTTTGCTTAAATGAGTTTCAACAAGATGAGAAGCTCAGGGTTATACCAAACTGTAGCCATGTCTTTCACATTGATTGTGTAGACGTTTGGCTTCAGAACAATGCTAATTGCCCTCTTTGTAGAAGAAGCATTTCCTTGACAAGTGAAGTCCAAGTTGATCATCAGCTTCTCACTCCAAGGCCTTCCCCTCAGGATCAAAGACAAAATGTTGAAGGTTGTGATGAAGATTTTGTTGTGATTGATTTGGATAATGAACATGATGGAGACCAACACTTGCAAGAAAGACAAGGCCAAGAATTGGAGTTACCAACAGGTCCTATTGGTCCTTTGCACTGGAAATTAGAGCAGAGAATTTTGCAGAAGAAAGCAAAGCAGCTTCAAAAAGTAACCAGCATGGGGGATGAGTGTATTGGTAATAGAGACAAAGATGATGGGTTCTCAGTCCAAACTATTAGGAGGTCTTTCTCCATGGACTCATCAGAGCACAGAAAGTTCTATTTGACAGTTCAACTTCAACAAAATGGGCATGTCCATGAGGCCAGTTCTATTGAAGTTAGTGGTGCTAGTAGTGATAGAGCCAAGATATCATGTTTTTCCTTTGGACATGGAAGTAGATCCAGAAGTGCTGTGTTACCTGTTTATTTGGACCCCTGA 1065 0.4085 MDFLSKKHLLNVSHTSCESEHGFSPITTNPPLVGHYSGSSFPIIATIVIGMFATSFLLMGYYIFVIKCCLNWNSVDLVRIRRFSLSRRFEEPSAAQSSHASEHRGLEEAVIRLIPVIHYKTEEGDTESGERSFCECAVCLNEFQQDEKLRVIPNCSHVFHIDCVDVWLQNNANCPLCRRSISLTSEVQVDHQLLTPRPSPQDQRQNVEGCDEDFVVIDLDNEHDGDQHLQERQGQELELPTGPIGPLHWKLEQRILQKKAKQLQKVTSMGDECIGNRDKDDGFSVQTIRRSFSMDSSEHRKFYLTVQLQQNGHVHEASSIEVSGASSDRAKISCFSFGHGSRSRSAVLPVYLDP 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi92g00034 354 ProSiteProfiles Zinc finger RING-type profile. 136 178 IPR001841 -
Sebi92g00034 354 SUPERFAMILY RING/U-box 135 184 - -
Sebi92g00034 354 CDD RING-H2_EL5-like 135 178 - -
Sebi92g00034 354 PANTHER RING-H2 FINGER PROTEIN ATL16 27 350 IPR044600 GO:0016567|GO:0016740
Sebi92g00034 354 Pfam Ring finger domain 135 178 IPR001841 -
Sebi92g00034 354 SMART ring_2 136 177 IPR001841 -
Sebi92g00034 354 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 92 183 IPR013083 -
Sebi92g00034 354 FunFam E3 ubiquitin-protein ligase ATL6 94 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi92g00034 Sebi-Chr92 569408 570472 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi92g00034 37 354 C3H Transcription Factor Family AT1G04360 44.413 1.54e-79 246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi92g00034 - - gmx:100794749 387.111