Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi92g00021 ATGGCGGAACATTCTGTAGCAGAAGGAGGAGGAACATTCCGCAATGTCCTCTCCCCGTCGAAGAACGACAATGTCGTTTTCGTAAACGGCAAACCCGTCCTCGTCGCCCAGCCCCTCACGGTAGTCCGTGCCCTAACCAGCACCGGCGGCGCCCGCGTTCTAGCGGCGCCGCTGAACCCCGACGAGTTCGACGCGTCCAAAACGCCGATGATCAAAGTGAAAGAGGAGCCGCATGAAGAAGAGAAAGCAAAAACGGTCTTCAACGTGGCTCAACCCGGACGGTCTATGCTTTCGTTCGACGATTTTCTTAAGGCTACGAACACAAAAGTCGCATCCGAAGAGGAGTGGCTGAAATCAATGGAAGTAGAACCACCGGTTCAAGCGATGGAAGGAGCTGTCGATGCTGACAAGGTTTGTGCAGAGAATGAGACAGTTAGGGATGAATCGGTTGAAGAATCACCGATTCAGGCTATGGAAGAGGTTTGTGCTGAGAAGGAGGCGGTCAATGTTGAACCGATTGAAGAACCACCGGTTCGAGCGATGGAAGAGGTTGACGATGTGGACAAGGTTTGTGCTGAGGAAGAGGCGGTCGAGGTTCAATCGGTTGAAGAACCACCGGTTCAAGCGATTGTAGAGGTTGTCGATGTGTACAAGGTTTGTGCGAAGAAAGAAGCGGCTAGGGATGAGGTGGTGAAGGTGGTGAAGAAGGAGGCGGTTGAAGAGAAGATCCCGAACCTTGAGGATGTTCGCATCTCAACTAAGCGTTCTGGAGAGGTTGGGAGGATGCCGATGGAATGGGCAAAAACTGTCATTCCACTCATGGAATCTGGAAAAGTTAAGGTTCGAGGCCGATGCATTGCCACGCCATATAAACTGCAAATGATGCAAGAAATCATGTTGCTTGTCAGCTTTTACGTTCACTACTCTATATTCACGGATGTTGTTGATACATCTTGGAGGCTAGAGGCTAGTGGTAACATTAACTCTAGCGTTTATCCACTCCTTTCACTGTTTAATATGCTAGAAATTAAGCCACATCGGAAGGCTGACTTCACCCCGGAGGATATAGATTCTCGGAAGCGGTTGTTTAATCCAAAGAAGCTTGATGCAGATGAAGCTGCAGCATTTCCTATGATCAAGCGAAGAAAGGGTGGTGAGCCGATTCCAGCACAAAATGATGATGAACAAGCTCTTTCAGAGTCTACTTTGAATAAACTTGTTGGAGCTGCAGAGATCTTTGACCTGGAGGAGAAGCAACCACCGAGAACCTTGATGTGTACTCTAAAGCCTTATCAGAAGCAAGCACTCTATTGGATGTCAGAAATTGAGAAGGGAATTGATGTCGAATCTGCTGATAGAAACCTGCATCCTTTCTGGTCAGCCTACAATATATGCAATGGAAGGACAATTTATGTTAATGTTTTCACTGGGGAAGGGACGATTAAATTTCCAAAAGCAACACAGATGGCAAGAGGAGGGATTCTAGCGGATGCCATGGGACTTGGAAAGACTGTTATGACGATTGCTCTGATTCTAAGTAATCCAGGCAGAGAAAGGTCGGAAAACAGCGATTGGGAGAGTATATATGACAGTATTATCACAAATAAGAGGAAGCATGTTAACTCCTCATGTAAAGTAGAGGGTGGCACTCTAATTGTTTGTCCCATGGCCTTGTTAGGTCAGTGGAAGGATGAGCTTGAAACGCATTCAAAACCAGGCAGTATATCCATATTTGTTCATTATGGTGGGGGCAGAACCAATAGTGCCGAGTTGATCTCCGGGTATGATGTTGTCTTAACAACATACGGTGTCCTATCAGCTGCATTCAGAAGTGATGGGGTGAATAGCATCTACCACAGGGTCCAATGGCACAGGGTGGTGCTAGATGAAGCTCATACTATAAAAGCCCATAAAAGCCAGGTTGCCCAGTCTGCATTTGCTTTGTCCTCACACTGCCGCTGGTGTCTAACTGGAACGCCGCTTCAGAATACACTAGAAGATTTATACAGCTTGTTATGTTTCCTGCGTGTCGAACCTTGGTGCAACTGGGAATGGTGGAGTAAGTTGGTTCAAAGGCCTTTTGATTATGGTGATCCAAGAGCTATAAAATTGGTCAAGGGCATTTTGAGGACACTGATGTTAAGAAGAACGAAGGAAACGAAGGATAGATATGGAAGGCCTATACTGGTCCTGCCACCAACTGATATTCAAGTGATTGAGTGTGAACAGTCAGAAACAGAACGTGACTTCTATGATGCCCTCTTCACTAGATCTAAAGTTCAATTTGATCAGTATGTTGCACAAGGAAAGGTTCTTAATCACTATGCCAATATCCTCGACCTACTAATGCAGTTGAGGCGGTGCTGTAACCATCCATTTTTGGTTATGTGCGGAAGTGATTCCCAGAAATATGCAGACTTGAGCAGACTCGCAAGAAGATTCTTCCAGTCTAATACCGAATCATCCGATATATGTGGTCAAAGGGATCCATTACAACATGAGGAGTTGAACAAACTAGCTAGTAGATTCTTTCTGAAGTCTGATTCTGCTTCGCACTCTATCCAATCTCGTGGATACATTGATGAGGTTTTGGAGCATATTCAAAAGGGTGAAACCATTGAATGCTCTATATGTATGGAATCACCAGATGATCCTGTGTTTACACCATGTGCACATAGGTTCTGTAGAGAATGCCTATTCAATTGCTGGGGGACCTCAATGGGTGGTAAATGTCCAATCTGTCGTCAAGAGCTTAAGAAAGATGATCTGATTACTTCTCCATCAGAATGCCCGTTCAGGGTTGATACTGAGAACAATTTGACAGTGTCTTCAAAGGTTTCAAAGCTATTGGATTTCTTGCAACGTATTCAGAAGTCATCTTCTGACGAGAAAAGTATTGTCTTCAGTCAATGGACTTCATTTTTTGATCTGTTGGAGAATCCATTGAGGAGTAGAGGAATAGGTTATTTAAGATTTGAAGGGAAATTGTCTCAGAAACAGAGGGAGAAGGTTCTGAAAGAATTTAATGAAACAAGTGAGAAAAGGGTTTTGTTGATGTCACTAAGAGCTGGTGGCGTTGGGTTGAACTTAACTGCAGCTTCTAATGTTTTCCTTATGGATCCATGGTGGAACCCTGCAGTTGAGGAGCAAGCAATAATGAGAATTCATCGTATAGGACAAAATCGAAGAGTTATTGTTAGGAGATTCATCGTGAAGGACACAGTGGAAGACCGATTGCAACAAGTTCAAGCCAGGAAACAGAGGATGATATCTGGTGCCCTCACCGATGATGAGGTTCGGTCTGCTAGGATTAAAGACCTAAAAATGCTATTCTCATGA 3339 0.448 MAEHSVAEGGGTFRNVLSPSKNDNVVFVNGKPVLVAQPLTVVRALTSTGGARVLAAPLNPDEFDASKTPMIKVKEEPHEEEKAKTVFNVAQPGRSMLSFDDFLKATNTKVASEEEWLKSMEVEPPVQAMEGAVDADKVCAENETVRDESVEESPIQAMEEVCAEKEAVNVEPIEEPPVRAMEEVDDVDKVCAEEEAVEVQSVEEPPVQAIVEVVDVYKVCAKKEAARDEVVKVVKKEAVEEKIPNLEDVRISTKRSGEVGRMPMEWAKTVIPLMESGKVKVRGRCIATPYKLQMMQEIMLLVSFYVHYSIFTDVVDTSWRLEASGNINSSVYPLLSLFNMLEIKPHRKADFTPEDIDSRKRLFNPKKLDADEAAAFPMIKRRKGGEPIPAQNDDEQALSESTLNKLVGAAEIFDLEEKQPPRTLMCTLKPYQKQALYWMSEIEKGIDVESADRNLHPFWSAYNICNGRTIYVNVFTGEGTIKFPKATQMARGGILADAMGLGKTVMTIALILSNPGRERSENSDWESIYDSIITNKRKHVNSSCKVEGGTLIVCPMALLGQWKDELETHSKPGSISIFVHYGGGRTNSAELISGYDVVLTTYGVLSAAFRSDGVNSIYHRVQWHRVVLDEAHTIKAHKSQVAQSAFALSSHCRWCLTGTPLQNTLEDLYSLLCFLRVEPWCNWEWWSKLVQRPFDYGDPRAIKLVKGILRTLMLRRTKETKDRYGRPILVLPPTDIQVIECEQSETERDFYDALFTRSKVQFDQYVAQGKVLNHYANILDLLMQLRRCCNHPFLVMCGSDSQKYADLSRLARRFFQSNTESSDICGQRDPLQHEELNKLASRFFLKSDSASHSIQSRGYIDEVLEHIQKGETIECSICMESPDDPVFTPCAHRFCRECLFNCWGTSMGGKCPICRQELKKDDLITSPSECPFRVDTENNLTVSSKVSKLLDFLQRIQKSSSDEKSIVFSQWTSFFDLLENPLRSRGIGYLRFEGKLSQKQREKVLKEFNETSEKRVLLMSLRAGGVGLNLTAASNVFLMDPWWNPAVEEQAIMRIHRIGQNRRVIVRRFIVKDTVEDRLQQVQARKQRMISGALTDDEVRSARIKDLKMLFS 1112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi92g00021 1112 Pfam Helicase conserved C-terminal domain 947 1059 IPR001650 -
Sebi92g00021 1112 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 484 678 IPR014001 -
Sebi92g00021 1112 Gene3D - 732 1112 IPR027417 -
Sebi92g00021 1112 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 948 1108 IPR001650 -
Sebi92g00021 1112 ProSitePatterns Zinc finger RING-type signature. 890 899 IPR017907 -
Sebi92g00021 1112 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 856 929 IPR013083 -
Sebi92g00021 1112 CDD DEXDc_SHPRH-like 428 716 - -
Sebi92g00021 1112 CDD RING-HC 874 914 - -
Sebi92g00021 1112 SMART helicmild6 976 1059 IPR001650 -
Sebi92g00021 1112 SUPERFAMILY RING/U-box 871 925 - -
Sebi92g00021 1112 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 729 1103 IPR027417 -
Sebi92g00021 1112 CDD SF2_C_SNF 941 1070 - -
Sebi92g00021 1112 Pfam Zinc finger, C3HC4 type (RING finger) 874 919 - -
Sebi92g00021 1112 Gene3D - 478 717 IPR038718 -
Sebi92g00021 1112 SMART ultradead3 424 686 IPR014001 -
Sebi92g00021 1112 ProSiteProfiles Zinc finger RING-type profile. 875 915 IPR001841 -
Sebi92g00021 1112 FunFam DNA repair protein RAD5B 481 717 - -
Sebi92g00021 1112 SMART ring_2 875 914 IPR001841 -
Sebi92g00021 1112 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 412 716 IPR027417 -
Sebi92g00021 1112 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 203 1111 - -
Sebi92g00021 1112 Pfam HIRAN domain 249 300 IPR014905 GO:0003676|GO:0008270|GO:0016818
Sebi92g00021 1112 Pfam SNF2-related domain 431 794 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi92g00021 Sebi-Chr92 386559 392532 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi92g00021 168 1111 RAD5 or RAD16-like Gene Family AT5G43530 59.607 0.0 1168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Sebi92g00021 SNF2_N 4e-79 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi92g00021 K15505 - gmx:100806677 1438.32