Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi927g00002 ATGAACGGAAAAGCCTCTGTCTCTAAGGAACTCCATGCCAAGCACACCAAGATCTTAGAGGGACTTGTTAAGCTACCTGACAACAGGGAATGTGCAGACTGCAAGAAGAAGGCACCACGATGGGCAAGTGTAAACTTAGGAATTTTCATTTGCATGCAATGTTCAGGGATTCACCGAAGTCTTGGAGTACATATATCAAAGGTGCGGTCAACAACTTTGGATACATGGTTGCCAGATCAAGTTTCTTTCATGCAATTTATGGGTAATGCAAAGTCAAATAAGCACTGGGAGGCAAAACTTCCACCAAATTTTGACAGAAATGGATATGGAATTGAGAAGTTTATTCGTGCCAAGTATGTGGAGAAAAGGTGGGCTTTGCAAGGTGAATTAAGATCATCATCAAAGTCAGATGAAATAATCTTTAACTTGAATGAGTCACCAGCTGCTGGGACTAAGAGTGGTATTCAAAGAAATAGGAGATTGTCTCTTGAGGAAAGCGTTCTTGTGAAGCATGTGGCACAAATTAGGCCTCCAGTTGCAAGATCTCATGAGGGCTCCTTAGATTTACAGAAGAAGATTTCACCATCATTAAAGAGGCCATCCGCATCACTTGATTTTGATAACTCCCTTGGAAAGAACAATGGTACTGTTGATCTTTTTGGCTTGCTTTCCACCCATGATGATAAACAGAATTTCTCAACTACACCTCCTCCTAGCTGGACAACATTTGATTGTTTGGGGACTAATTTTTCATTTAACACAGACTGCAGCAGGATATAA 780 0.409 MNGKASVSKELHAKHTKILEGLVKLPDNRECADCKKKAPRWASVNLGIFICMQCSGIHRSLGVHISKVRSTTLDTWLPDQVSFMQFMGNAKSNKHWEAKLPPNFDRNGYGIEKFIRAKYVEKRWALQGELRSSSKSDEIIFNLNESPAAGTKSGIQRNRRLSLEESVLVKHVAQIRPPVARSHEGSLDLQKKISPSLKRPSASLDFDNSLGKNNGTVDLFGLLSTHDDKQNFSTTPPPSWTTFDCLGTNFSFNTDCSRI 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi927g00002 259 FunFam stromal membrane-associated protein 1 isoform X1 1 129 - -
Sebi927g00002 259 Gene3D Arf GTPase activating protein 2 130 IPR038508 -
Sebi927g00002 259 SMART arf_gap_3 5 130 IPR001164 GO:0005096
Sebi927g00002 259 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 244 IPR044520 GO:0005096
Sebi927g00002 259 PRINTS HIV Rev interacting protein signature 28 47 IPR001164 GO:0005096
Sebi927g00002 259 PRINTS HIV Rev interacting protein signature 47 64 IPR001164 GO:0005096
Sebi927g00002 259 PRINTS HIV Rev interacting protein signature 68 89 IPR001164 GO:0005096
Sebi927g00002 259 Pfam Putative GTPase activating protein for Arf 17 126 IPR001164 GO:0005096
Sebi927g00002 259 CDD ArfGap 19 119 - -
Sebi927g00002 259 ProSiteProfiles ARF GTPase-activating proteins domain profile. 16 137 IPR001164 GO:0005096
Sebi927g00002 259 SUPERFAMILY ArfGap/RecO-like zinc finger 15 126 IPR037278 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi927g00002 Sebi-Chr927 13447 16897 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi927g00002 19 134 C2H2 Transcription Factor Family AT4G05330 48.361 3.58e-29 110