LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sebi926g00013	ATGGTATCATGTGTTAATGGTTATGGGAGCAGTGGTTGGACTAATGCACATGCCACCTTCTATGGTGGCAGTGATGCTTCTGGAACAATGGGTAGTGGGGCTTGTGGGTATGGAAACTTGTACAGTCAAGGTTATGGGACTAATACAGCAGCACTTAGCACTGCCTTGTTCAACAATGGCTTAAGCTGTGGAGCATGCTTTGAAATTAAATGTGTAAATGACCCACAATGGTGCCTCCCTGGCTCTATTGTAGTCACTGCCACTAATTTCTGTCCACCTGGTGGTTGGTGTGACCCTCCCAATCACCATTTTGATCTTTCTCAACCTGTTTTCCAGCACATTGCTCAATATAAAGCTGGTATTGTTCCTGTAGCTTACAGAAGTGCTGTGACTAATGTTGGGGGTGCTGGTGATGTGCATTCTGTAGCAATCAAAGGTTCAAGAACTAGATGGCAAGGCATGTCAAGGAATTGGGGCCAAAACTGGCAGAGCAACTCCTACCTGAATGGACAGAGTCTTTCCTTTAGTCACCACTGGTAA	540	0.4556	MVSCVNGYGSSGWTNAHATFYGGSDASGTMGSGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEIKCVNDPQWCLPGSIVVTATNFCPPGGWCDPPNHHFDLSQPVFQHIAQYKAGIVPVAYRSAVTNVGGAGDVHSVAIKGSRTRWQGMSRNWGQNWQSNSYLNGQSLSFSHHW	179

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sebi926g00013	179	SUPERFAMILY	PHL pollen allergen	129	176	IPR036749	-
	Sebi926g00013	179	PRINTS	Expansin/Lol pI family signature	53	71	IPR007118	GO:0005576
	Sebi926g00013	179	PRINTS	Expansin/Lol pI family signature	12	27	IPR007118	GO:0005576
	Sebi926g00013	179	PRINTS	Expansin/Lol pI family signature	31	49	IPR007118	GO:0005576
	Sebi926g00013	179	PRINTS	Expansin/Lol pI family signature	119	135	IPR007118	GO:0005576
	Sebi926g00013	179	ProSiteProfiles	Expansin, Cellulose-binding-like domain profile.	130	179	IPR007117	-
	Sebi926g00013	179	PANTHER	EXPANSIN-A15	129	176	IPR002963	GO:0009664
	Sebi926g00013	179	CDD	DPBB_EXPA_N	12	127	-	-
	Sebi926g00013	179	Pfam	Expansin C-terminal domain	129	175	IPR007117	-
	Sebi926g00013	179	Gene3D	-	4	130	IPR036908	-
	Sebi926g00013	179	PRINTS	Expansin signature	44	58	IPR002963	GO:0009664
	Sebi926g00013	179	PRINTS	Expansin signature	111	124	IPR002963	GO:0009664
	Sebi926g00013	179	PRINTS	Expansin signature	83	93	IPR002963	GO:0009664
	Sebi926g00013	179	PRINTS	Expansin signature	71	82	IPR002963	GO:0009664
	Sebi926g00013	179	PRINTS	Expansin signature	94	111	IPR002963	GO:0009664
	Sebi926g00013	179	SMART	dpbb_1	49	126	IPR007112	-
	Sebi926g00013	179	Pfam	Lytic transglycolase	49	126	IPR009009	-
	Sebi926g00013	179	SUPERFAMILY	Barwin-like endoglucanases	7	128	IPR036908	-
	Sebi926g00013	179	ProSiteProfiles	Expansin, family-45 endoglucanase-like domain profile.	32	136	IPR007112	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sebi926g00013	Sebi-Chr926	265257	266189	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sebi926g00013	1	176	Expansin Gene Family	AT2G03090	72.330	3.45e-99	285

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sebi926g00013	K20628		-	gmx:100790170	334.724