Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi926g00008 ATGGCGGTTGTTTCGTGTGGCTTTCATGGCGTGAAGAGCCTCTGTGGGATAAGGAATCCTTGGAGGGTGAAGGTTAAGCTTGTGAGAATTTGGAACAGGTGTGCAGTTGCAACTCTTGACGATCCCTTCGCTACCCAAATGCTTTTGGTTGATGAAGAGGGTGATCGAATAGAGGCAACAGTCCAAAAGCATAACATGAAGAAGTTCGCTAATGTGATGGTTGAAGGACATGTGTATAAGATAACAAACTTTGGAGTTATGCGTAACACTGGAAACTTTAGGGCATGTGCTCATGAATTTAAGATTGTCTTCAATGCAAATATGAAGATTATAATAGTGCCCAATGCTGCAATTCCTTCTATGGGGTTTTGTTTGGTAAAAACCTCTGATATTACCAAAACAAGTGGGCGTTCCCAATTCCTTCTTGATTTCATGGGAATTGTTACTGGAGTGTCGGAGGAGATTAATCTTAACAAGCAAGGGCGTGCTACCCGATTAATGCTCTTAGACATGGTTGACGAAATGGGAAACATTAGGTGTGCTGTGTTCGGCCAGTTGGTTGATACGATTCTTGGTTTCCTCGCTTTACCCCGACAAGGACTTCTTGTAGTTATAATACAGCTGGGGAGGGTTAATCTGTATAAGGGTGAGGTTGGTTTGCAAAATGTGATGAACGCTACTAAGATCTGGTGGAATCCAGACATTCCAATTGCTGTGGAGTTTAAGAATAGCCTTGCAGTTCATGAGATTGAGACTGATGTTGTTATTTCCCTAATAGCGGATCGAGCTTGGCCTGTTTCTATGAGTGATGAGTTTCTGCAACTATACCCAAGAAAGAACGCTGGACAGCTGCATGAAATGGAAGGATTTTTCATTGTATTGGCTACTATTAAGGAAATTGTTGAGGAAGAATTGTGGTGGTATACGGCTTGCACTTGTCTGAAAGCTGTTAATTTTTCTCGAGGCTTCCCATATTGTGATGATTGCAAACGTCCTGTCTTTGATCTTTCCCCAAGGTACAGGATCAAGGTTCTGGTTTCTGATGGGGATGATTGTGCACACTTCATAATGTTTGATTCTGAATGCTTTTCATTGTTGAACAAGTCTTGTCGTGACCTGTTAGCTGATTCTAAGGGTGAAGACTCAGCAGCTTACCCTTATGAGATACTCAACTTTATTTGGATGGAGTTGTTGTTCCGTATAAAGAGGAAGGAGGATCCAAACTTTGGATATGATGACAGCTTCAGAGTGAGGAGGATATGTTCTGAGTCCTCTATAATTTCTGGGTTCACTGATAACATTGATGATGAAACCCCGTTGAAGCTAAAATTTGCCCCACCCTTCACAAAGGTTGGACATAGTGAGCCCAACGGTACTGTTATGGAGGTCTCATCCCATGGAAATTCTTCTTTCACTGAGATTGAGGTGTCCCCAATTTCATGTGCCCCCATCACCTGTTGTTGGAGAGTGCAGTGTGGCATCTAA 1485 0.4249 MAVVSCGFHGVKSLCGIRNPWRVKVKLVRIWNRCAVATLDDPFATQMLLVDEEGDRIEATVQKHNMKKFANVMVEGHVYKITNFGVMRNTGNFRACAHEFKIVFNANMKIIIVPNAAIPSMGFCLVKTSDITKTSGRSQFLLDFMGIVTGVSEEINLNKQGRATRLMLLDMVDEMGNIRCAVFGQLVDTILGFLALPRQGLLVVIIQLGRVNLYKGEVGLQNVMNATKIWWNPDIPIAVEFKNSLAVHEIETDVVISLIADRAWPVSMSDEFLQLYPRKNAGQLHEMEGFFIVLATIKEIVEEELWWYTACTCLKAVNFSRGFPYCDDCKRPVFDLSPRYRIKVLVSDGDDCAHFIMFDSECFSLLNKSCRDLLADSKGEDSAAYPYEILNFIWMELLFRIKRKEDPNFGYDDSFRVRRICSESSIISGFTDNIDDETPLKLKFAPPFTKVGHSEPNGTVMEVSSHGNSSFTEIEVSPISCAPITCCWRVQCGI 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi926g00008 494 CDD RPA1_DBD_C 285 420 IPR047192 -
Sebi926g00008 494 SUPERFAMILY Nucleic acid-binding proteins 284 422 IPR012340 -
Sebi926g00008 494 Gene3D - 8 111 IPR012340 -
Sebi926g00008 494 Pfam Replication factor-A C terminal domain 290 418 IPR013955 -
Sebi926g00008 494 SUPERFAMILY Nucleic acid-binding proteins 125 248 IPR012340 -
Sebi926g00008 494 CDD RPA1_DBD_B_like 143 245 - -
Sebi926g00008 494 Gene3D - 273 426 IPR012340 -
Sebi926g00008 494 Pfam Domain of unknown function DUF223 47 132 IPR003871 -
Sebi926g00008 494 SUPERFAMILY Nucleic acid-binding proteins 7 115 IPR012340 -
Sebi926g00008 494 Gene3D - 117 253 IPR012340 -
Sebi926g00008 494 CDD RPA1_DBD_A_like 22 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi926g00008 Sebi-Chr926 162458 165068 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi926g00008 9 401 Core DNA Replication Machinery Family AT5G08020 23.601 1.04e-15 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi926g00008 - - lja:Lj6g3v0884310.1 351.288