Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi925g00010 ATGCCTGTAAATCCATGGACCCTCTTCTTCTTATGCATTTCCCTTTTCCTTCCATACCATTCTTTTATAGCTCTTGCAGTAAACCAACAAGGGGAGGCTCTTCTTTCATGGAAGAGAACCCTGAATGGATCAGTGGGGGTATTGAGTAACTGGGACCCAGTTGATGATACACCATGTAGCTGGTTTGGAGTCAGTTGCAACTTGAAGAATGAAGTAGTACAATTAGATCTGAGGTATGTGGATTTGCTTGGAGGACTTCCAACTAATTTCACCTCATTGCTTTCCTTGAATAGTCTCATCTTAACTGGAACCAACCTCACCGGTTCAATCCCAAAAGAAATAGGCAACCTTGGTGAACTCAGCTACTTGGACTTGAGTGACAATGCCTTGAGTGGTGAAATCCCAAGTGAGCTCTGCTACTTGCCTAAACTACAGGAACTTCATCTGAACTCCAACGACCTTGTGGGGTCAATTCCAGTTGCAATTGGGAACCTCACAAAGTTGGAGAAGCTGACTTTATATGACAATCAACTCAGTGGTGAAATTCCCAGTACCATAGGGAACCTGGGGAGCCTACAAGTGATAAGAGCAGGAGGTAACAAGAATCTTGAAGGCCCTTTGCCACAGGAAATTGGCAACTGTTCCAATTTGGTCATGTTGGGCCTTGCTGAAACAAGTATCTCAGGTTTTTTACCACCAACACTTGGCCTCCTGAAGAAGCTTGAAACCATTGCCATTTACACTTCCCTCCTCTCAGGACAAATACCCCTGAACTTGCAAATTGGGGAACCTTATAAACCTCCAAAATCTTCTTCTGTGGCAGAACAACTTAGTTGGCACATCCCTCCAGAGATTGGAAACTGCTACCAGTTATTAGTGATTGACGTGTCAATGAATTCAATAACAGGAAGCATTCCCAAAAGTTTTGGGAACTTGACTTCTCTGCAAGAACTCCAACTCAGTGTGAACCAAATTTCAGGGGAGATTCCTGGAGAACTTGGAAATTGTCAGCAACTCACTCATGTGGAGCTGGACAACAACCAAATAACAGGCACAATACCCTCCGAATTGGGAAACCTTGGGAATCTAACGTTGTTATTCCTATGGCACAACAAGCTACAAGGTAACATACCCTCGTCCCTTTCCAATTGTCAAACCCTTGAGGCTATTGATCTATCACAGAATCAGTTGACGGGTCCCATACCAAAGGGGATATTCGAGCTCAAGAATCTCAACAAGCTTTTGTTGCTCTCTAACAATCTCTCTGGTAAAATCCCCTCTCAAATTGGGAATTGTTCCTCTCTTATTCGCTTCAGAGCAAACGACAACAATATTACAGGGAGCATCCCTTCACAGATTGGGAATCTCAAGAATTTGAATTTCTTGGACCTAGGGAACAATCGGATTTCCGGAATTATCCCGGAGGAAATCTCCGGCAGCCGGAATCTCACCTTTTTGGACTTGCATTCCAATTTCATCGCCGGAAACTTGCCTGAAAGTCTGAGCCAGCTCGTCTCTCTTCAATTTCTTGATGTCTCCGATAACATGATTGAAGGCACACTGAGCCCTACCCTCGGTTCACTCTCTGCTCTCACCAAACTGGTTCTCCGAAGAATCGTATCTCCGGGTCAATTCCGAGTCGACTCGGTTCTGTTCCAAGATGCAGTTGCTGGACCTAAGCAGCAACAGTCTGACGAAGCTCGGAGTCTTGGACATATCTCACAACGTTCTCGCCGGAACCTTCACTATCTCGCCGACCTTCAAAATCTCGTGGTCCTCAATATCTCCTACAACAAATTCTCCGGTCGTGTTCCAGACACGCCATTCTTCGCGAAGCTTCCATTAAGCGTGCTCACGGGAAACCCCTCGCTGTGCTTCTCCGGCAACCAATGCGACGGCGCCGAAGGCGCCGGGAAATCATCTCGGCGGAGGAGGGAGGCGCGCGTGGCAATGGTGGTCCTGCTATGCGTCGCGTGCGTGCTCCTCATGGCGGCGCTTTACGTCGTCGTTTCAGGTAAACGACGAGGGGACCAAGAAAACGACGCGGACCTCGATGGAAAAGACAGCGACGTTGACATGGCCCCACCTTGGGAGGTGACACTGTACCAGAAGCTCGACCTGTCAATCTCTGACGTAGCGAAATGCCTCTCTGCTGGCAACGTCATCGGCCACGGTCGATCCGGCGTCGTTTACAGGGTCAACATGCCTGCCACCGGATTGACCATCGCGGGGTGCACAGGATTAATGGAATGGGAGACGCGGCTCAAGATAGCACTAGGCGTGGCTGAGGGTTTAGCTTACTTGCACCACGATTGCGTCCCTGCTATCTTGCACCGGGATGTGAAGGCGCAAAACATTTTGTTAGGAGACACATATGAGGCTTGTTTGGCTGATTTTGGATTCGCTCGGTTCGTGGAAGAAGATCACGCTTCGTTTTCCCTTAATCCACAGTTCGCTGGTTCTTACGGCTACATTGCTCCTGCTACGTTAGAGACAGAAATGGAGCATTTGAAGAGCAAGAAGGACCCAATTGAGGTTCTGGATTCCAAGCTTCAAGGCCATCCAGACACACAAATACAAGAGATGTTACAAGCACTTGGTATCTCTCTCTTGTGTACAAGTAATCGTGCAGAGGATCGACCGACAATGAAAGATGTCGCTGCATTATTAAGGGAAATTCGACACGATACTCCTGCAGGTGCTGAGCCCCACAAGCCTAAAAGAACTACTGAAGCTTCGTCCTATTCTTCGTCCTCTGTTACCCCTGCTCAGTTGTTGCTCCTTCAATCCAATTCACATTCCTCATCACTTGCTTATTCCTCTTCCTCACTAGCACCCTACCACTCACCAAGGAACCAATCATGA 2865 0.4771 MPVNPWTLFFLCISLFLPYHSFIALAVNQQGEALLSWKRTLNGSVGVLSNWDPVDDTPCSWFGVSCNLKNEVVQLDLRYVDLLGGLPTNFTSLLSLNSLILTGTNLTGSIPKEIGNLGELSYLDLSDNALSGEIPSELCYLPKLQELHLNSNDLVGSIPVAIGNLTKLEKLTLYDNQLSGEIPSTIGNLGSLQVIRAGGNKNLEGPLPQEIGNCSNLVMLGLAETSISGFLPPTLGLLKKLETIAIYTSLLSGQIPLNLQIGEPYKPPKSSSVAEQLSWHIPPEIGNCYQLLVIDVSMNSITGSIPKSFGNLTSLQELQLSVNQISGEIPGELGNCQQLTHVELDNNQITGTIPSELGNLGNLTLLFLWHNKLQGNIPSSLSNCQTLEAIDLSQNQLTGPIPKGIFELKNLNKLLLLSNNLSGKIPSQIGNCSSLIRFRANDNNITGSIPSQIGNLKNLNFLDLGNNRISGIIPEEISGSRNLTFLDLHSNFIAGNLPESLSQLVSLQFLDVSDNMIEGTLSPTLGSLSALTKLVLRRIVSPGQFRVDSVLFQDAVAGPKQQQSDEARSLGHISQRSRRNLHYLADLQNLVVLNISYNKFSGRVPDTPFFAKLPLSVLTGNPSLCFSGNQCDGAEGAGKSSRRRREARVAMVVLLCVACVLLMAALYVVVSGKRRGDQENDADLDGKDSDVDMAPPWEVTLYQKLDLSISDVAKCLSAGNVIGHGRSGVVYRVNMPATGLTIAGCTGLMEWETRLKIALGVAEGLAYLHHDCVPAILHRDVKAQNILLGDTYEACLADFGFARFVEEDHASFSLNPQFAGSYGYIAPATLETEMEHLKSKKDPIEVLDSKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAALLREIRHDTPAGAEPHKPKRTTEASSYSSSSVTPAQLLLLQSNSHSSSLAYSSSSLAPYHSPRNQS 954
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi925g00010 954 Gene3D Transferase(Phosphotransferase) domain 1 741 921 - -
Sebi925g00010 954 MobiDBLite consensus disorder prediction 895 909 - -
Sebi925g00010 954 SUPERFAMILY Protein kinase-like (PK-like) 713 926 IPR011009 -
Sebi925g00010 954 Pfam Protein kinase domain 750 834 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi925g00010 954 Gene3D Ribonuclease Inhibitor 184 262 IPR032675 -
Sebi925g00010 954 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 27 200 - -
Sebi925g00010 954 SUPERFAMILY RNI-like 279 606 - -
Sebi925g00010 954 Gene3D Ribonuclease Inhibitor 26 183 IPR032675 -
Sebi925g00010 954 Pfam Leucine rich repeat 441 491 IPR001611 GO:0005515
Sebi925g00010 954 Pfam Leucine rich repeat 293 349 IPR001611 GO:0005515
Sebi925g00010 954 MobiDBLite consensus disorder prediction 895 920 - -
Sebi925g00010 954 ProSiteProfiles Leucine-rich repeat profile. 458 479 IPR001611 GO:0005515
Sebi925g00010 954 Gene3D Ribonuclease Inhibitor 269 378 IPR032675 -
Sebi925g00010 954 SUPERFAMILY L domain-like 27 257 - -
Sebi925g00010 954 SMART serkin_6 716 890 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi925g00010 954 Pfam Leucine rich repeat N-terminal domain 28 67 IPR013210 -
Sebi925g00010 954 SMART LRR_typ_2 312 336 IPR003591 -
Sebi925g00010 954 SMART LRR_typ_2 504 528 IPR003591 -
Sebi925g00010 954 SMART LRR_typ_2 360 384 IPR003591 -
Sebi925g00010 954 SMART LRR_typ_2 456 480 IPR003591 -
Sebi925g00010 954 SMART LRR_typ_2 117 141 IPR003591 -
Sebi925g00010 954 SMART LRR_typ_2 408 432 IPR003591 -
Sebi925g00010 954 SMART LRR_typ_2 165 189 IPR003591 -
Sebi925g00010 954 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 318 539 - -
Sebi925g00010 954 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 12 259 - -
Sebi925g00010 954 ProSiteProfiles Protein kinase domain profile. 534 954 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi925g00010 954 Gene3D Ribonuclease Inhibitor 379 630 IPR032675 -
Sebi925g00010 954 ProSitePatterns Serine/Threonine protein kinases active-site signature. 776 788 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi925g00010 Sebi-Chr925 241617 245493 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi925g00010 25 944 Receptor kinase-like Gene Family AT5G56040 42.265 0.0 717
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Sebi925g00010 Pkinase 1.5e-14 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi925g00010 - - adu:107493731 1218.76