Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi925g00008 ATGACTTCCCGTTATGATTTAATCTCTAATGTGAATGGAGGCTCTGAGCATAAGATATGGAGAATTAAAGTCAGAGTCATTAGGCTATGGAGGTCTTCATATTATAAGGATAACAATAATAAACAAATGATTGAATTGGTTGTTTTGGACGAACAGGGAGGTCGTATCCAATGCACGGTGAAGAGCATTCATGTGTATCTGTTTGAGAATAATATCAACGAAGATAATGTGTACATGCTAGAAAACCTCAGCGTTGCACTTAACAGTGGAAAGTACAAACCTACAATGCATGAATTTAGAATGTTCTTCAAGAGAGAGACACGAGTTACTCTGGTAGAAGATTCTTCCATTCCCCTCTATGGTTTTTCATTTGTCCCATTCGTTGAAATATTGAATGAAACTAAGGACGACAGACGTTTGGTTGATGTACTAGGTGTTGTTACTGGGAAAGGTAATCTGATTGAGTTCAAGAAAGAGGGAAAGCCATGCAACTATGTTGTCATAGAGTTGGAAAATACTGAGGGAGGTCTTAAACTTAGGTGTACTTTATGGGAGGACTATGCTTTTATGTTTTTGAAACATTTGGAAGACCATCCATCTGAGTCCTATGTTGTTGTTCTTCAATTTGCAAAAATGAAAAATTTTAAAGGGTCAGTAGGTGTTTCAAACACAACTTACAACTCTAAGTTGTTTATCAATGCCAATATTCCTGAAATTGAAGACTTTCAAATGAGGTTGAAATCTTCTGATTCTCAACAAGGTATTCAGTTTAGTCAGTTAAGTGATCATGCTTCTTTGACCCTTGAGGAAGAATTTCTTGAAAGAGGAGTGTACAAATCAATTGCTAATTTGAAAGAAGTAACACAGAATTCTGTTTTTGTAACAATTGGGACTGTTAAGGACATTGAGTCTGAATATAACTGGTGCTATCGTGATTGTAAGAAATGTTCTCTTGGTTTGAAGTTGGATGGGTCTATGTTCTATTGTAAAAAATGTGTCACTCATTATTCAACTTTTGTGACAAGATATTCTATTCAGCTTCGTGTAGTGGATGAGACAGATTCTGCATCTTTTATCTTATTTGATAAAGAAGCCTCAAATTTCCTGAAAATTCTTGCATATGAACTTCGCACTTCATATATTGCTAAGGGTGGAGATAAGAATAGGCATCCCGAAGAGATTGATTCCTTTAAAGATAGGAAATTCCTTTTTAAAGTGCAAGTTAAGATTCAAGATATGGAGTCAATTGTTCCTTATGTCATTAGTATTTCAAGGCTTTGTTTTGAAGATAACATTATAGCTTCCTTTGAAAAGAAATACCAAATTGAAGAGGTAGCATTAATTCAAGACAACTCTGAACTTTTGAGTCAGTTTACTGAGTCCTCAGATCTGTTGAAGATTGCTTTCTTATTTAAATTTCAATTTTGGTTTCACGACAATTTATCTGTGTCATGTGATAATGGAGTAGATACTCCAAGTCCCCTTTTACCGACTGGAAAAACGACATCGAATATGGATTCAAGTGTTATAAAGGTTCTTGATGTGGATCTTGCTGAGTATTGTGGAAATGCAAGTTTTGATACTCTCTCAAAATGCAAGGGTGAGATGCATTCTGAACAGACCATAGTTCGCGTTGCTGTTCATGGCGATGAACAATCTGCTAAGAAGCTGAGGAAAGTTATCAAGGAAGAGAAGAATTAG 1701 0.3557 MTSRYDLISNVNGGSEHKIWRIKVRVIRLWRSSYYKDNNNKQMIELVVLDEQGGRIQCTVKSIHVYLFENNINEDNVYMLENLSVALNSGKYKPTMHEFRMFFKRETRVTLVEDSSIPLYGFSFVPFVEILNETKDDRRLVDVLGVVTGKGNLIEFKKEGKPCNYVVIELENTEGGLKLRCTLWEDYAFMFLKHLEDHPSESYVVVLQFAKMKNFKGSVGVSNTTYNSKLFINANIPEIEDFQMRLKSSDSQQGIQFSQLSDHASLTLEEEFLERGVYKSIANLKEVTQNSVFVTIGTVKDIESEYNWCYRDCKKCSLGLKLDGSMFYCKKCVTHYSTFVTRYSIQLRVVDETDSASFILFDKEASNFLKILAYELRTSYIAKGGDKNRHPEEIDSFKDRKFLFKVQVKIQDMESIVPYVISISRLCFEDNIIASFEKKYQIEEVALIQDNSELLSQFTESSDLLKIAFLFKFQFWFHDNLSVSCDNGVDTPSPLLPTGKTTSNMDSSVIKVLDVDLAEYCGNASFDTLSKCKGEMHSEQTIVRVAVHGDEQSAKKLRKVIKEEKN 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi925g00008 566 Gene3D - 7 115 IPR012340 -
Sebi925g00008 566 CDD RPA1_DBD_B_like 142 247 - -
Sebi925g00008 566 PANTHER OS03G0429900 PROTEIN 18 415 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Sebi925g00008 566 Gene3D - 273 436 IPR012340 -
Sebi925g00008 566 CDD RPA1_DBD_A_like 21 109 - -
Sebi925g00008 566 Pfam Domain of unknown function DUF223 45 136 IPR003871 -
Sebi925g00008 566 Gene3D - 116 258 IPR012340 -
Sebi925g00008 566 Pfam Replication factor-A C terminal domain 293 411 IPR013955 -
Sebi925g00008 566 SUPERFAMILY Nucleic acid-binding proteins 122 248 IPR012340 -
Sebi925g00008 566 SUPERFAMILY Nucleic acid-binding proteins 8 115 IPR012340 -
Sebi925g00008 566 SUPERFAMILY Nucleic acid-binding proteins 284 416 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi925g00008 Sebi-Chr925 164136 166716 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi925g00008 20 415 Core DNA Replication Machinery Family AT5G08020 24.029 2.52e-16 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi925g00008 - - adu:107477146 460.299