Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi917g00004 ATGCCGAAACTGAAACGGTGTAAACTGGAGGAGCCCGATTCCGAAGGCTATGATGGGCGTTCAGCGATTCAGAAGAAGCGCAAGGTGAATGGGTTTTACTCTTTGGCTATGCCAGGTGATGCTGAAGATTTCAGCAGTGGTTCTGGTTCTTGGAGCAGTGAAGGTTCGCATTGGGGTGGTGGTGGGGGTGAGGTTCAGTCCAATTCAAATTCTGCGCCATTGGATGGTAAAACAGCGAAACACTGGGGCTCTGAAGGGCCTAGGCCTCCCTTGTTGCGGTCCTCACGTGGCCGCCTTCAGATGCTTCCGTCCAGGTTCAGTGACTCGGTTCTTGATTCATGGAAGAATCGAGGAATGAAAACAGAGGACGGAGACTCCAGCTTTGAGGATGATAAGAGTTTTGTAGAAGATGATAGGGCTGGTATTAGTGCTGAGGGATTTGTAAAACTTGAGAAGAGTGATAGCCATGGATTGAAAAATTCTGTGTGTTATCCGTGTCCTGAAGTGAAGGTTGATAAAAGGGAGCATGCTGATTCGTCTAGTGTTGGTAGAAAGACTGTGAAGACTGAGAGTAACACGTCTGGTCTTAGTTTTGAAGGTGTGGACCAAAAGCCTAATGAGAATGCTGAAAAGAGGAAAGAGATTTACAAGCCAGAGGATTTTGCTTTGGGTGATATAGTTTGGGCTAAATGTGGGAAGAGATATCCGGCGTGGCCTGCTGTGGTGATTGATCCCATCTTGGATGCCCCCAAATCCGTCCTGAGCTGTTGTGTTCCCGGTGCACTTTGCGTGATGTTTTATGGTTATTCAAAAAATGGAACGCAAAGGATTCCAGGGGCAGACCCGGTTGTACAAGAGCAACCGAGTGACTTTCGCATGGCACTGGAGGAGGCAATGTTGGCAGAAGATGGTATTCTGGAATCACAGTTGGGAGGAGCAGAGGAAGTAACTAATTTAAAAGCTCGTCCTGATGGACTTATAGAGGCCATGGGTTCATGTGTTGATCAGGAATATTACTGCCAGGATCCGGATGCAAGATATTGTGCTGGCTGTGGTTTGTTGTTGCCATGCAAAACCATGAAGAAGATTAAGGATTCAAGTTATGCACCTCAATTTTATTGCAAACATTGTGCCAAGCTACGAAAATCTAAACAATATTGTGGCATTTGCAAAAAGATTTGGCATCATTCAGATGGTGGGAATTGGGTATGTTGTGATGGTTGTAATGTTTGGGTGCATGCTGAGTGTGATAAAATTTCCACCAAACTTTTCAAGGATCTGGAAAATACAGATTATTATTGTCCAGATTGCAAAGGAAAGTTAAATTGTAAATTAGCATCACAAACATATAAGTCAAAAACCAAACCAGTAGAGAATTGCCAAAAACCTGTGGTACCTGATAAGGTACTGGTGGTGTGCAATGGCATGGAAGGAATTTACATCCCAAATCTTCATTTAGTTATGTGCAAGTGTGGCTCTTGTGGTTCAAGGAAGCAGACACTGAGTGAATGGGAAAAGCATACAGGTTGCAGAGCCAAAAAATGGAAACATAGTGTGAAAGTGAAAAGCTCAATGATAACACTAGAAAAATGGATCACAGAGCACATTTCACAAGATGGAGTTCCTCAGCAGTTAGATCAGCAGCAGGTGCTTGCCTTTCTGCAAGGTGGTGCTCTGAAGCCAACTGATGTTGAGATGTTGTGGGTTCATGTAACTTGCGCTTGGTTTCGACCTGAAGTTGTTTTCCAAAACCATGAGGCCATGGAACCTGCCTCAGGAATTCTTAGAATTCCTCCTAATTCCTTTGTGAAGCCATGGTTCCTGTACAAGTTGTTGCAAGTGTGCTACTTATTTTCATGTGATGTGTGCATCGAGAGCAGGATATACCATGGAATTGCATTCTATGGAGAAGAATGGGACTCAAATAACAAAGAAGCTAATATTTGTGCAGTTCACAGAGTCCCAAGTCCAGATTCAGTACTGGTTGCACATACACCCCTGGGGATTTTCTCTCCCAGAACATCACTTCAAAATCGTAAGGGATGCTTCAGGGGATCAAGGCTGGTTTCATCAAAGAATGTTGAGCTTAATGAATCTTCAACCACTGAAAATGACTGCATTGAACCACTATCTGCTGCCAGATGTCGTGTGTACCAGAGGTCTCCTAATAAGAGGGCGGATGTGCCAATAATTCACTTGCTGAGGGGGCCCAGCCTTCATTCTTTAGGTGCAATAACTCAGTTGAACAGCTATAAGGATGAAGATTCTAAAGTATTTACTTCTTTCAAGGAACGTCTTCACCATTTACAGAAAATGGAAAGACTTAGTGTTTGCTTTGGAAAATCGGGTATTCATGGATGGGGTCTCTTTGCTCGTAGAGATGTACAAGAAGGAGAGATGGTTGTTGAGTATAGAGGTGAGCAGGTAAGGCGCAGTGTTGCTGATATGAGGGAAGCAAAATACCGTTCAGAAGGCAAAGATTGCTATCTGTTCAAGATCAGTGAGGAAGTGGTAATAGATGCAACACACAAGGGCAATATAGCACGTTTGATAAACCATTCTTGCATGCCAAACTGCTATGCAAGGATTATGAGCTTGGGTGATCAGGAGAGCCGGATTGTTCTTATTGCCAAAACCAATGTTTCTGCTGGTGAAGAACTAACGTATGATTACTTGTTCGATCCAGATGAGCGGGATGAACTGAAAGTTCCCTGCCTTTGCAAAGCCCCCAATTGTAGGAAATTTATGAACTAG 2754 0.4379 MPKLKRCKLEEPDSEGYDGRSAIQKKRKVNGFYSLAMPGDAEDFSSGSGSWSSEGSHWGGGGGEVQSNSNSAPLDGKTAKHWGSEGPRPPLLRSSRGRLQMLPSRFSDSVLDSWKNRGMKTEDGDSSFEDDKSFVEDDRAGISAEGFVKLEKSDSHGLKNSVCYPCPEVKVDKREHADSSSVGRKTVKTESNTSGLSFEGVDQKPNENAEKRKEIYKPEDFALGDIVWAKCGKRYPAWPAVVIDPILDAPKSVLSCCVPGALCVMFYGYSKNGTQRIPGADPVVQEQPSDFRMALEEAMLAEDGILESQLGGAEEVTNLKARPDGLIEAMGSCVDQEYYCQDPDARYCAGCGLLLPCKTMKKIKDSSYAPQFYCKHCAKLRKSKQYCGICKKIWHHSDGGNWVCCDGCNVWVHAECDKISTKLFKDLENTDYYCPDCKGKLNCKLASQTYKSKTKPVENCQKPVVPDKVLVVCNGMEGIYIPNLHLVMCKCGSCGSRKQTLSEWEKHTGCRAKKWKHSVKVKSSMITLEKWITEHISQDGVPQQLDQQQVLAFLQGGALKPTDVEMLWVHVTCAWFRPEVVFQNHEAMEPASGILRIPPNSFVKPWFLYKLLQVCYLFSCDVCIESRIYHGIAFYGEEWDSNNKEANICAVHRVPSPDSVLVAHTPLGIFSPRTSLQNRKGCFRGSRLVSSKNVELNESSTTENDCIEPLSAARCRVYQRSPNKRADVPIIHLLRGPSLHSLGAITQLNSYKDEDSKVFTSFKERLHHLQKMERLSVCFGKSGIHGWGLFARRDVQEGEMVVEYRGEQVRRSVADMREAKYRSEGKDCYLFKISEEVVIDATHKGNIARLINHSCMPNCYARIMSLGDQESRIVLIAKTNVSAGEELTYDYLFDPDERDELKVPCLCKAPNCRKFMN 917
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi917g00004 917 MobiDBLite consensus disorder prediction 37 132 - -
Sebi917g00004 917 Pfam PHD-zinc-finger like domain 553 601 - -
Sebi917g00004 917 CDD PHD_TCF19_like 387 437 - -
Sebi917g00004 917 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 379 443 IPR013083 -
Sebi917g00004 917 Gene3D SET domain 689 917 IPR046341 -
Sebi917g00004 917 Gene3D - 210 304 - -
Sebi917g00004 917 PANTHER PHD FINGER PROTEINS 4 894 - -
Sebi917g00004 917 FunFam Histone-lysine N-methyltransferase 749 917 - -
Sebi917g00004 917 Pfam PHD-finger 386 439 IPR019787 -
Sebi917g00004 917 Pfam SET domain 786 891 IPR001214 GO:0005515
Sebi917g00004 917 ProSiteProfiles SET domain profile. 775 892 IPR001214 GO:0005515
Sebi917g00004 917 Pfam PWWP domain 224 279 IPR000313 -
Sebi917g00004 917 MobiDBLite consensus disorder prediction 174 212 - -
Sebi917g00004 917 SUPERFAMILY FYVE/PHD zinc finger 384 445 IPR011011 -
Sebi917g00004 917 SUPERFAMILY SET domain 769 914 IPR046341 -
Sebi917g00004 917 MobiDBLite consensus disorder prediction 115 132 - -
Sebi917g00004 917 ProSiteProfiles Post-SET domain profile. 901 917 IPR003616 -
Sebi917g00004 917 SUPERFAMILY Tudor/PWWP/MBT 214 272 - -
Sebi917g00004 917 SMART PostSET_3 901 917 IPR003616 -
Sebi917g00004 917 SMART PHD_3 386 438 IPR001965 -
Sebi917g00004 917 MobiDBLite consensus disorder prediction 1 21 - -
Sebi917g00004 917 CDD SET_SETD1-like 764 913 - -
Sebi917g00004 917 MobiDBLite consensus disorder prediction 184 201 - -
Sebi917g00004 917 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 19 917 IPR025780 -
Sebi917g00004 917 ProSiteProfiles Zinc finger PHD-type profile. 384 440 IPR019787 -
Sebi917g00004 917 SMART set_7 775 898 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi917g00004 Sebi-Chr917 48544 56984 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi917g00004 344 411 EF-hand Containing Proteins AT5G28340 57.353 1.06e-19 91.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Sebi917g00004 SET 1.2e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi917g00004 - - gmx:100797346 753.051