Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi917g00003 ATGGCCGATTCGTTGCCCGTGTCTTGCTATGTTATTAAAAGGCTTTCAGTTCCAGTTGCAATGCCAGGACGGTATGAGGAAAATCTCACAGATGTCCTTAGTGAAGATCTTCGATTAACATGGGATAAACCTGTCTGCCGATATTGCGAATCACAAGAGCTAATGTGTGGATTTGAGAGCAGTAACAGCAATCGAGTTACCTGTTTATCTGATTTCCAAACAGATGATTCGCAACAAGGACTACGAGTTTTTAGAATCATCGCATTATGCATTAGTGGACCAGCTGCAGTGTTTGTTATTTTGATGGCAAGCTGTGTGTGCTACAATGACAGAATAACCAATGCTACAAGAAATGCAGCTTCCCTGAGGTCAGCACCAGCTGCAATATTACCAGAACCAACCATTGTGACTGTGGGTCTGGATGAGTCTACAATTGAATCATATGAGAAGGTGGTACTAGGGGAGAGTCGACGAGTGCCTGGACCCAATGGTGGATGTTGCTGGATATGTTTGTCAGAGTACAACAGCAAAGAGACAATCAGATGCATTCCTGAATGCAACCACTGTTTCCATGCTGACTGCATAGATGAATGGCTTCGCATGAACAACACATGCCCTGTTTGCCGCAACTCTCCCTCCCCTTCTCCTTCTTCTGTTGTTTCCTCCATAAACCCTTAA 678 0.444 MADSLPVSCYVIKRLSVPVAMPGRYEENLTDVLSEDLRLTWDKPVCRYCESQELMCGFESSNSNRVTCLSDFQTDDSQQGLRVFRIIALCISGPAAVFVILMASCVCYNDRITNATRNAASLRSAPAAILPEPTIVTVGLDESTIESYEKVVLGESRRVPGPNGGCCWICLSEYNSKETIRCIPECNHCFHADCIDEWLRMNNTCPVCRNSPSPSPSSVVSSINP 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi917g00003 225 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 133 214 IPR013083 -
Sebi917g00003 225 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 4 213 IPR046948 -
Sebi917g00003 225 Pfam Ring finger domain 167 209 IPR001841 -
Sebi917g00003 225 ProSiteProfiles Zinc finger RING-type profile. 167 209 IPR001841 -
Sebi917g00003 225 Pfam Wall-associated receptor kinase C-terminal 18 69 IPR032872 -
Sebi917g00003 225 SUPERFAMILY RING/U-box 166 213 - -
Sebi917g00003 225 SMART ring_2 167 208 IPR001841 -
Sebi917g00003 225 CDD RING-H2_EL5-like 166 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi917g00003 Sebi-Chr917 39804 41486 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi917g00003 5 213 C3H Transcription Factor Family AT1G28040 45.701 7.84e-55 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi917g00003 - - aprc:113851081 318.161